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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0136600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.03) R2 : 0.00111
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0449 (0.0632) R2dN8 : 0.00143 R2N8 : 0.00111
σ : 0.565
deviance : 146.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.37 0.555 3.14 0.667 0.161 -0.605 -0.271 2.5 -0.0606 5.4 30.08 1468 -- --
140.07 0.551 3.2 0.21 0.171 -0.311 -0.188 -- -0.0602 5.22 29.5 1384 -- --
139.55 0.55 3.14 0.665 0.159 -0.627 -- 2.59 -0.0603 5.37 30.06 1497 -- --
140.07 0.551 3.19 0.169 0.172 -0.317 -- -- -0.0227 5.29 29.4 1355 -- --
140.65 0.552 3.15 0.644 -- -0.675 -- 2.7 -0.0412 -- 29.97 1693 -- --
145 0.565 3.19 0.0707 0.153 -- -0.314 -- -0.0415 5.94 -- -- -- --
145.24 0.564 3.19 0.0683 0.152 -- -- -- -0.0402 6.07 -- -- -- --
141.04 0.553 3.19 0.182 -- -0.381 -- -- 0.0115 -- 28.84 1791 -- --
140.83 0.553 3.2 -- 0.176 -0.291 -- -- -0.0392 5.27 29.4 1339 -- --
146.43 0.565 3.2 0.0726 -- -- -- -- -0.0368 -- -- -- -- --
145.36 0.564 3.2 -- 0.153 -- -- -- -0.0478 6.05 -- -- -- --
141.87 0.555 3.19 -- -- -0.346 -- -- -0.0128 -- 29 1795 -- --
146.57 0.565 3.2 -- -- -- -- -- -0.0449 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.19 humidity 80.0 30 < th dose independent rect. 1 4
5 135.88 humidity 80.0 30 < th dose dependent rect. 1 4
9 137.28 humidity 80.0 30 < th dose independent rect. 1 1
13 137.28 humidity 80.0 30 < th dose dependent rect. 1 1
21 137.34 humidity 80.0 43200 < th dose dependent rect. 24 1
22 137.40 humidity 80.0 43200 < th dose dependent rect. 22 6
23 137.41 humidity 80.0 43200 < th dose dependent rect. 22 3
25 137.42 humidity 80.0 43200 < th dose dependent rect. 22 1
36 137.47 wind 9.0 14400 < th dose independent rect. 6 5
37 137.47 humidity 80.0 43200 < th dose dependent rect. 3 1
43 137.53 humidity 80.0 43200 < th dose independent rect. 24 1
51 137.62 humidity 80.0 43200 < th dose independent rect. 3 1
52 137.63 humidity 80.0 43200 > th dose independent rect. 3 1
54 137.64 humidity 80.0 43200 < th dose independent rect. 24 4
55 137.65 humidity 80.0 43200 > th dose independent rect. 1 1
76 137.76 humidity 80.0 43200 > th dose independent rect. 1 3
103 137.95 wind 9.0 43200 > th dose independent rect. 9 5
111 138.01 wind 9.0 43200 < th dose independent rect. 8 6
115 138.03 wind 9.0 43200 < th dose independent rect. 6 9
117 138.04 wind 9.0 43200 < th dose independent rect. 1 14
129 138.06 wind 9.0 43200 > th dose independent rect. 2 14
130 138.06 wind 9.0 43200 > th dose independent rect. 24 16
142 138.09 wind 9.0 43200 > th dose independent rect. 7 9
143 138.09 wind 9.0 43200 > th dose independent rect. 5 11
199 138.28 wind 7.0 14400 > th dose dependent rect. 20 17
200 138.29 wind 3.0 43200 > th dose independent rect. 6 1
201 138.29 temperature 25.0 720 > th dose dependent rect. 20 13
204 138.31 humidity 80.0 1440 > th dose independent rect. 1 1
208 138.33 wind 1.0 43200 < th dose dependent rect. 8 1
212 138.36 wind 7.0 43200 > th dose dependent rect. 5 11
218 138.37 wind 7.0 43200 > th dose dependent rect. 8 8
226 138.38 precipitation 0.1 14400 > th dose dependent rect. 2 16
227 138.39 temperature 30.0 1440 < th dose independent rect. 14 2
234 138.42 temperature 25.0 1440 > th dose dependent rect. 18 15
235 138.43 temperature 30.0 1440 > th dose independent rect. 14 2
238 138.43 wind 9.0 43200 > th dose independent rect. 19 21
239 138.43 wind 7.0 43200 > th dose dependent rect. 9 5
250 138.45 wind 3.0 43200 < th dose independent rect. 6 1
251 138.45 humidity 80.0 720 < th dose independent rect. 1 1
258 138.45 humidity 80.0 720 < th dose dependent rect. 1 1
279 138.49 wind 9.0 43200 < th dose independent rect. 12 2
280 138.49 wind 9.0 14400 > th dose independent rect. 6 5
284 138.50 wind 9.0 43200 < th dose independent sin 2 NA
295 138.51 precipitation 0.1 14400 > th dose dependent rect. 23 19
312 138.54 wind 9.0 43200 > th dose independent sin 2 NA
321 138.55 wind 9.0 14400 < th dose independent rect. 19 18
322 138.55 humidity 90.0 14400 > th dose dependent rect. 20 3
354 138.59 wind 7.0 43200 > th dose dependent sin 2 NA
364 138.62 humidity 90.0 14400 > th dose independent rect. 18 5
380 138.66 humidity 90.0 14400 > th dose independent rect. 21 2
393 138.67 precipitation 0.1 14400 > th dose dependent rect. 5 3
400 138.68 wind 9.0 14400 > th dose independent rect. 9 2
416 138.71 humidity 90.0 14400 > th dose independent rect. 18 2
427 138.73 radiation 10.0 43200 > th dose independent rect. 9 1
428 138.73 precipitation 0.1 14400 < th dose independent rect. 5 3
434 138.73 precipitation 0.1 14400 < th dose dependent rect. 5 3
440 138.75 wind 3.0 43200 < th dose independent rect. 2 1
455 138.76 precipitation 0.1 14400 > th dose independent rect. 5 3
457 138.76 precipitation 0.1 14400 > th dose independent rect. 3 15
458 138.76 precipitation 0.1 14400 < th dose independent rect. 3 15
463 138.76 precipitation 0.1 14400 < th dose dependent rect. 3 15
468 138.77 humidity 90.0 14400 > th dose dependent rect. 4 19
471 138.78 radiation 40.0 43200 < th dose independent rect. 10 1
475 138.78 precipitation 0.1 14400 > th dose dependent sin 1 NA
478 138.79 radiation 40.0 43200 > th dose independent rect. 10 1
499 138.82 precipitation 0.1 14400 > th dose independent rect. 11 16
500 138.82 precipitation 0.1 14400 < th dose independent rect. 11 16
511 138.82 precipitation 0.1 14400 < th dose dependent rect. 11 16
519 138.83 precipitation 0.1 14400 < th dose independent rect. 15 12
520 138.83 precipitation 0.1 14400 > th dose independent rect. 14 13
526 138.83 precipitation 0.1 14400 < th dose dependent rect. 15 12
532 138.84 wind 7.0 14400 > th dose independent rect. 11 1
542 138.84 humidity 90.0 14400 > th dose dependent sin 17 NA
551 138.85 precipitation 0.1 14400 > th dose independent sin 17 NA
553 138.85 precipitation 0.1 14400 < th dose independent sin 17 NA
563 138.85 precipitation 0.1 14400 < th dose dependent sin 17 NA
565 138.85 wind 7.0 43200 > th dose dependent rect. 12 2
613 138.87 temperature 25.0 1440 > th dose dependent rect. 17 8
632 138.88 wind 9.0 43200 > th dose independent rect. 24 20
636 138.88 temperature 25.0 1440 > th dose dependent rect. 18 2
637 138.88 temperature 25.0 1440 > th dose dependent rect. 18 6
645 138.88 precipitation 0.1 14400 > th dose dependent rect. 17 21
646 138.88 precipitation 0.1 14400 > th dose dependent rect. 17 23
647 138.88 precipitation 0.1 14400 > th dose dependent rect. 19 23
648 138.89 temperature 25.0 4320 > th dose independent rect. 6 1
653 138.89 wind 3.0 43200 > th dose independent rect. 2 13
675 138.89 precipitation 0.1 14400 > th dose dependent rect. 13 21
676 138.89 precipitation 0.1 14400 > th dose dependent rect. 2 22
681 138.89 precipitation 0.1 14400 > th dose dependent rect. 4 23
685 138.90 wind 1.0 43200 > th dose independent rect. 8 1
702 138.90 precipitation 0.1 14400 > th dose dependent no NA NA
711 138.90 precipitation 0.1 14400 > th dose dependent rect. 17 18
714 138.90 precipitation 0.1 14400 > th dose dependent rect. 15 20
716 138.90 precipitation 0.1 14400 > th dose dependent rect. 9 22
724 138.91 humidity 90.0 14400 < th dose independent rect. 18 5
736 138.91 precipitation 0.1 14400 > th dose independent rect. 4 17
773 138.92 precipitation 0.1 14400 < th dose independent rect. 4 17
777 138.92 humidity 90.0 14400 > th dose independent rect. 5 18
780 138.92 precipitation 0.1 14400 > th dose independent rect. 5 22
781 138.92 precipitation 0.1 14400 < th dose independent rect. 5 22
785 138.92 radiation 10.0 43200 < th dose dependent rect. 9 1
792 138.92 precipitation 0.1 14400 < th dose dependent rect. 4 17
817 138.92 precipitation 0.1 14400 < th dose dependent rect. 5 22
844 138.93 precipitation 0.1 14400 > th dose dependent rect. 13 18
856 138.94 temperature 25.0 4320 < th dose independent rect. 6 1
867 138.94 precipitation 0.1 14400 > th dose independent rect. 4 20
869 138.94 precipitation 0.1 14400 < th dose independent rect. 5 20
887 138.94 precipitation 0.1 14400 < th dose dependent rect. 5 20
892 138.95 humidity 80.0 14400 > th dose independent rect. 8 3
915 138.95 humidity 90.0 14400 > th dose independent rect. 2 21
931 138.95 humidity 90.0 14400 > th dose dependent rect. 9 16