Os01g0136400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0136400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.29 | 0.374 | 7.55 | -0.00331 | 0.485 | 0.448 | 0.243 | -0.963 | 0.487 | 7.51 | 24.2 | 130 | -- | -- |
| 67.24 | 0.382 | 7.59 | -0.318 | 0.478 | 0.41 | 0.112 | -- | 0.379 | 7.43 | 24.2 | 136 | -- | -- |
| 63.43 | 0.371 | 7.55 | -0.00666 | 0.487 | 0.443 | -- | -0.943 | 0.481 | 7.36 | 24.2 | 130 | -- | -- |
| 67.25 | 0.382 | 7.59 | -0.328 | 0.489 | 0.399 | -- | -- | 0.376 | 7.24 | 24.12 | 136 | -- | -- |
| 74.04 | 0.401 | 7.56 | 0.00533 | -- | 0.55 | -- | -1.19 | 0.546 | -- | 25 | 268 | -- | -- |
| 77.09 | 0.412 | 7.63 | -0.479 | 0.596 | -- | -0.333 | -- | 0.18 | 6.17 | -- | -- | -- | -- |
| 77.29 | 0.412 | 7.63 | -0.481 | 0.595 | -- | -- | -- | 0.182 | 6.38 | -- | -- | -- | -- |
| 77.74 | 0.411 | 7.58 | -0.295 | -- | 0.506 | -- | -- | 0.441 | -- | 24.24 | 195 | -- | -- |
| 69.94 | 0.39 | 7.57 | -- | 0.474 | 0.452 | -- | -- | 0.435 | 7.4 | 24.1 | 142 | -- | -- |
| 95.65 | 0.457 | 7.64 | -0.466 | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
| 83.39 | 0.427 | 7.62 | -- | 0.588 | -- | -- | -- | 0.235 | 6.43 | -- | -- | -- | -- |
| 79.93 | 0.416 | 7.58 | -- | -- | 0.571 | -- | -- | 0.461 | -- | 25.2 | 398 | -- | -- |
| 101.37 | 0.47 | 7.63 | -- | -- | -- | -- | -- | 0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 3 | 51.87 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 12 | 53.25 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 44 | 54.83 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 72 | 55.70 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 77 | 55.81 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 19 |
| 91 | 56.18 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 104 | 56.41 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 118 | 56.58 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 128 | 56.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 129 | 56.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 130 | 56.95 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 131 | 56.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 22 |
| 132 | 56.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 153 | 57.39 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 155 | 57.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 166 | 57.74 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 167 | 57.76 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 175 | 57.84 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 176 | 57.85 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 177 | 57.85 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 179 | 57.85 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 180 | 57.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 182 | 57.85 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 183 | 57.85 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 184 | 57.85 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 204 | 58.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 205 | 58.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 241 | 58.20 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 245 | 58.26 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 265 | 58.37 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 289 | 58.60 | temperature | 15.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 294 | 58.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 10 |
| 296 | 58.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 303 | 58.72 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 308 | 58.73 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 316 | 58.77 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 318 | 58.78 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 329 | 58.85 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 333 | 58.88 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 335 | 58.88 | temperature | 15.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 344 | 58.93 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 350 | 59.07 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 379 | 59.17 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 19 |
| 380 | 59.17 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 382 | 59.18 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 21 |
| 383 | 59.18 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 392 | 59.23 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 394 | 59.24 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 400 | 59.28 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 420 | 59.41 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 421 | 59.41 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 427 | 59.45 | wind | 7.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 432 | 59.48 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 451 | 59.59 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 462 | 59.64 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 463 | 59.64 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 466 | 59.64 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 467 | 59.64 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 472 | 59.64 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 9 |
| 473 | 59.64 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 15 |
| 475 | 59.64 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 15 |
| 477 | 59.64 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 479 | 59.64 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 482 | 59.64 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 488 | 59.68 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 489 | 59.68 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 491 | 59.68 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 492 | 59.68 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 494 | 59.68 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 495 | 59.68 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 502 | 59.72 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 3 |
| 504 | 59.72 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 521 | 59.74 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 523 | 59.75 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 524 | 59.76 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 525 | 59.76 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 534 | 59.80 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 545 | 59.85 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 548 | 59.86 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 569 | 59.96 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 578 | 59.98 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 579 | 59.99 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 583 | 60.01 | radiation | 10.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 606 | 60.06 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 607 | 60.06 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 655 | 60.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 666 | 60.19 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 673 | 60.20 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 707 | 60.25 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 725 | 60.30 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 15 |
| 741 | 60.34 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 15 |
| 745 | 60.34 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 749 | 60.35 | wind | 9.0 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 771 | 60.38 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 790 | 60.44 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 793 | 60.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 7 |
| 794 | 60.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 796 | 60.45 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 806 | 60.48 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 828 | 60.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 829 | 60.52 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 841 | 60.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 844 | 60.55 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 845 | 60.55 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 851 | 60.56 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 852 | 60.56 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 860 | 60.58 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 864 | 60.59 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 927 | 60.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 958 | 60.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 962 | 60.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 963 | 60.85 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 982 | 60.89 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 995 | 60.92 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 996 | 60.92 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 3 |