Os01g0135400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0135400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.98 | 0.55 | 6.25 | 1.43 | 1.08 | 1.61 | 0.647 | -0.193 | 0.131 | 9.93 | 22.29 | 2103 | -- | -- |
| 137.05 | 0.545 | 6.25 | 1.37 | 1.07 | 1.61 | 0.646 | -- | 0.115 | 9.93 | 22.22 | 2116 | -- | -- |
| 138.52 | 0.548 | 6.25 | 1.42 | 1.07 | 1.61 | -- | -0.122 | 0.121 | 10 | 22.28 | 2121 | -- | -- |
| 138.53 | 0.548 | 6.25 | 1.39 | 1.07 | 1.62 | -- | -- | 0.118 | 10 | 22.26 | 2121 | -- | -- |
| 204.78 | 0.666 | 6.26 | 1.44 | -- | 1.73 | -- | -0.1 | 0.196 | -- | 22.4 | 2258 | -- | -- |
| 231.57 | 0.713 | 6.38 | 0.709 | 1.2 | -- | 0.623 | -- | -0.453 | 10 | -- | -- | -- | -- |
| 233.05 | 0.715 | 6.38 | 0.734 | 1.19 | -- | -- | -- | -0.451 | 10.1 | -- | -- | -- | -- |
| 204.76 | 0.666 | 6.27 | 1.46 | -- | 1.78 | -- | -- | 0.179 | -- | 22.25 | 2236 | -- | -- |
| 176.51 | 0.619 | 6.3 | -- | 0.951 | 1.24 | -- | -- | -0.132 | 9.7 | 22.4 | 884 | -- | -- |
| 319.04 | 0.835 | 6.41 | 0.718 | -- | -- | -- | -- | -0.453 | -- | -- | -- | -- | -- |
| 247.25 | 0.736 | 6.4 | -- | 1.19 | -- | -- | -- | -0.533 | 10.1 | -- | -- | -- | -- |
| 227.47 | 0.702 | 6.33 | -- | -- | 1.46 | -- | -- | -0.0934 | -- | 22.28 | 828 | -- | -- |
| 332.64 | 0.851 | 6.43 | -- | -- | -- | -- | -- | -0.533 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 3 | 141.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 24 | 142.59 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 29 | 142.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 70 | 143.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 107 | 144.49 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 108 | 144.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 112 | 144.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 117 | 144.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 140 | 144.86 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 143 | 144.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 161 | 144.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 185 | 145.16 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 209 | 145.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 225 | 145.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 242 | 145.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 248 | 145.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 4 |
| 292 | 145.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 402 | 146.31 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 452 | 146.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 462 | 146.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 478 | 146.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 610 | 147.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 661 | 147.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 921 | 148.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |