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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0135000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 1,4-beta-D xylan xylanohydrolase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0233) R2 : 0.000347
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0195 (0.049) R2dN8 : 0.000448 R2N8 : 0.000347
σ : 0.438
deviance : 88.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.96 0.431 2.87 -0.156 0.00562 0.529 -0.246 -1.79 0.0375 15.4 0.3865 3458 -- --
85.84 0.432 2.85 -0.203 0.0221 0.361 -0.251 -- 0.0351 15.1 0.3962 3958 -- --
84.11 0.427 2.87 -0.143 0.0175 0.536 -- -1.81 0.0341 12.3 0.4993 3447 -- --
86.04 0.432 2.85 -0.21 0.026 0.369 -- -- 0.0351 14.7 0.3982 3766 -- --
84.15 0.427 2.87 -0.163 -- 0.543 -- -1.8 0.0342 -- 0.5 3447 -- --
87.32 0.438 2.85 -0.14 0.039 -- -0.254 -- 0.00524 13.6 -- -- -- --
87.48 0.438 2.85 -0.148 0.0544 -- -- -- 0.00313 10.4 -- -- -- --
86.07 0.432 2.85 -0.212 -- 0.373 -- -- 0.0326 -- 0.4106 3766 -- --
87.02 0.434 2.84 -- 0.0473 0.306 -- -- 0.0581 10.8 0.4382 3950 -- --
87.67 0.438 2.85 -0.149 -- -- -- -- 0.00293 -- -- -- -- --
88.07 0.439 2.85 -- 0.0553 -- -- -- 0.0197 10.6 -- -- -- --
86.91 0.434 2.84 -- -- 0.256 -- -- 0.0581 -- 0.45 6300 -- --
88.25 0.438 2.85 -- -- -- -- -- 0.0195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.78 radiation 1.0 90 < th dose independent rect. 8 1
4 77.78 radiation 1.0 90 < th dose dependent rect. 8 1
15 83.45 atmosphere 995.0 14400 > th dose independent rect. 5 7
17 83.54 precipitation 0.1 4320 > th dose independent rect. 22 2
18 83.54 precipitation 0.1 4320 > th dose dependent rect. 22 2
20 83.55 radiation 40.0 14400 < th dose independent rect. 16 11
21 83.57 atmosphere 995.0 14400 > th dose independent rect. 24 1
23 83.57 precipitation 0.1 4320 < th dose independent rect. 22 1
26 83.57 precipitation 0.1 4320 < th dose dependent rect. 22 1
28 83.63 precipitation 0.1 4320 > th dose independent rect. 12 1
31 83.63 precipitation 0.1 4320 > th dose dependent rect. 12 1
36 83.67 precipitation 0.1 4320 < th dose independent rect. 11 1
40 83.67 precipitation 0.1 4320 < th dose dependent rect. 11 1
41 83.67 precipitation 0.1 4320 > th dose dependent rect. 21 4
44 83.70 precipitation 0.1 4320 < th dose independent rect. 21 4
45 83.70 precipitation 0.1 4320 < th dose dependent rect. 21 4
47 83.72 temperature 25.0 270 < th dose independent rect. 8 2
52 83.74 atmosphere 995.0 14400 > th dose independent rect. 22 3
57 83.76 atmosphere 995.0 14400 > th dose independent rect. 22 1
59 83.76 atmosphere 995.0 14400 > th dose independent rect. 22 5
67 83.79 atmosphere 995.0 14400 > th dose independent rect. 20 7
68 83.80 atmosphere 995.0 14400 > th dose independent rect. 2 1
70 83.80 precipitation 0.1 4320 < th dose independent rect. 8 1
71 83.80 atmosphere 995.0 14400 > th dose independent rect. 20 5
73 83.80 atmosphere 995.0 14400 > th dose independent rect. 24 12
74 83.80 precipitation 0.1 4320 < th dose dependent rect. 8 1
78 83.81 precipitation 0.1 4320 > th dose independent rect. 9 4
79 83.81 precipitation 0.1 4320 < th dose independent rect. 7 5
83 83.81 wind 1.0 4320 < th dose dependent rect. 19 1
85 83.81 precipitation 0.1 4320 > th dose dependent rect. 9 4
86 83.81 precipitation 0.1 4320 < th dose dependent rect. 7 5
94 83.82 precipitation 0.1 4320 > th dose independent rect. 7 6
95 83.82 atmosphere 995.0 14400 > th dose independent rect. 22 14
97 83.82 precipitation 0.1 4320 > th dose dependent rect. 7 6
98 83.83 temperature 20.0 1440 > th dose independent rect. 9 1
123 83.84 atmosphere 995.0 14400 > th dose independent rect. 20 16
131 83.85 atmosphere 995.0 14400 > th dose independent rect. 22 11
141 83.87 atmosphere 995.0 14400 < th dose independent rect. 1 1
146 83.87 atmosphere 995.0 14400 < th dose independent rect. 21 1
298 83.87 atmosphere 995.0 14400 < th dose dependent rect. 1 1
303 83.87 atmosphere 995.0 14400 < th dose dependent rect. 21 1
471 83.89 atmosphere 995.0 14400 > th dose independent rect. 2 10
479 83.90 precipitation 0.1 4320 > th dose independent rect. 8 1
489 83.90 precipitation 0.1 4320 > th dose dependent rect. 8 1
516 83.93 atmosphere 995.0 14400 < th dose dependent sin 8 NA
535 83.96 precipitation 0.1 4320 > th dose independent rect. 16 1
540 83.97 precipitation 0.1 4320 < th dose independent rect. 18 5
544 83.97 precipitation 0.1 4320 < th dose dependent rect. 18 5
548 83.98 precipitation 0.1 4320 > th dose independent rect. 18 5
556 83.99 precipitation 0.1 4320 > th dose dependent rect. 18 5
574 84.00 precipitation 0.1 4320 > th dose dependent rect. 16 1
602 84.03 precipitation 0.1 4320 < th dose independent rect. 18 1
608 84.03 precipitation 0.1 4320 < th dose dependent rect. 18 1
617 84.05 precipitation 0.1 4320 < th dose independent rect. 16 1
621 84.05 precipitation 0.1 4320 < th dose dependent rect. 16 1
624 84.06 atmosphere 1000.0 14400 > th dose independent rect. 16 1
633 84.08 wind 1.0 4320 < th dose independent rect. 19 1
642 84.09 precipitation 0.1 4320 > th dose dependent rect. 21 16
650 84.11 precipitation 0.1 4320 > th dose independent rect. 18 1
654 84.11 precipitation 0.1 4320 > th dose independent rect. 21 16
661 84.12 precipitation 0.1 4320 > th dose independent rect. 8 17
662 84.12 precipitation 0.1 4320 < th dose independent rect. 8 17
667 84.12 precipitation 0.1 4320 < th dose dependent rect. 8 17
672 84.13 precipitation 0.1 4320 < th dose independent rect. 16 7
673 84.13 precipitation 0.1 4320 > th dose independent rect. 8 15
674 84.13 precipitation 0.1 4320 < th dose independent rect. 8 15
681 84.13 precipitation 0.1 4320 < th dose dependent rect. 16 7
682 84.13 precipitation 0.1 4320 < th dose dependent rect. 8 15
687 84.14 precipitation 0.1 4320 > th dose independent rect. 16 7
713 84.15 precipitation 0.1 4320 < th dose independent rect. 21 16
722 84.15 precipitation 0.1 4320 < th dose dependent rect. 21 16
729 84.16 precipitation 0.1 4320 < th dose independent rect. 11 14
740 84.16 precipitation 0.1 4320 < th dose dependent rect. 11 14
746 84.16 precipitation 0.1 4320 > th dose dependent rect. 18 19
750 84.17 precipitation 0.1 4320 > th dose independent rect. 11 12
751 84.17 precipitation 0.1 4320 < th dose independent rect. 11 12
752 84.17 precipitation 0.1 4320 > th dose independent rect. 11 14
758 84.17 precipitation 0.1 4320 > th dose independent rect. 18 19
761 84.17 precipitation 0.1 4320 < th dose dependent rect. 11 12
763 84.17 precipitation 0.1 4320 > th dose dependent rect. 8 15
764 84.17 precipitation 0.1 4320 > th dose dependent rect. 8 17
769 84.18 precipitation 0.1 4320 < th dose independent rect. 16 3
781 84.18 precipitation 0.1 4320 < th dose independent rect. 18 19
783 84.18 precipitation 0.1 4320 < th dose dependent rect. 16 3
789 84.18 precipitation 0.1 4320 < th dose dependent rect. 18 19
790 84.19 radiation 40.0 270 < th dose independent rect. 9 1
804 84.19 radiation 20.0 270 > th dose independent rect. 12 22
805 84.19 precipitation 0.1 4320 > th dose dependent rect. 18 1
841 84.21 radiation 40.0 14400 > th dose independent rect. 7 1
863 84.21 radiation 40.0 14400 > th dose dependent rect. 7 1
888 84.22 precipitation 0.1 4320 > th dose independent rect. 16 3
934 84.24 precipitation 0.1 4320 > th dose independent rect. 16 21
942 84.24 precipitation 0.1 4320 > th dose dependent rect. 11 12
952 84.25 precipitation 0.1 4320 < th dose independent sin 19 NA
961 84.25 precipitation 0.1 4320 < th dose independent rect. 16 21
962 84.25 precipitation 0.1 4320 < th dose dependent sin 19 NA
963 84.25 precipitation 0.1 4320 > th dose dependent rect. 8 11
967 84.25 precipitation 0.1 4320 < th dose dependent rect. 16 21
968 84.26 precipitation 0.1 4320 > th dose independent sin 19 NA
975 84.26 precipitation 0.1 4320 < th dose independent rect. 8 11
983 84.26 precipitation 0.1 4320 > th dose dependent rect. 16 7
988 84.26 precipitation 0.1 4320 < th dose dependent rect. 8 11
996 84.27 precipitation 0.1 4320 > th dose independent rect. 8 11