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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0134200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.38 (0.0358) R2 : 0.673
β1 : 1.25 (0.131) R2dD : 0.0678 R2D : 0.0484
β2 : 2.7 (0.0929) R2dC : 0.611 R2C : 0.592
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.409 (0.0763) R2dN8 : 0.0276 R2N8 : -0.00129
σ : 0.672
deviance : 206.16
__
_____
C
peak time of C : 18.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.87 0.614 4.39 1.35 2.48 0.517 2.16 1.04 0.35 19.4 26.9 68 -- --
173.15 0.613 4.41 1.15 2.49 0.56 2.29 -- 0.287 19.4 26.9 73 -- --
183.25 0.63 4.38 1.34 2.47 0.538 -- 1.3 0.364 19.4 26.81 72 -- --
186.95 0.637 4.4 1.08 2.48 0.6 -- -- 0.314 19.4 27 75 -- --
362.23 0.886 4.34 0.955 -- 1.83 -- 1.16 0.0105 -- 26.2 436 -- --
189.42 0.645 4.39 1.3 2.7 -- 2.55 -- 0.403 18.9 -- -- -- --
206.16 0.672 4.38 1.25 2.7 -- -- -- 0.409 18.9 -- -- -- --
361.74 0.886 4.45 0.659 -- 1.94 -- -- -0.202 -- 26.2 426 -- --
216.26 0.685 4.45 -- 2.42 0.784 -- -- 0.16 19.6 27.03 80 -- --
589.59 1.13 4.33 1.19 -- -- -- -- 0.358 -- -- -- -- --
247.34 0.736 4.42 -- 2.69 -- -- -- 0.27 18.9 -- -- -- --
372.91 0.899 4.47 -- -- 2.02 -- -- -0.296 -- 26.25 426 -- --
627.07 1.17 4.36 -- -- -- -- -- 0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.38 temperature 25 720 > th dose dependent rect. 3 4
4 166.41 temperature 25 720 > th dose dependent rect. 1 7
7 166.60 temperature 25 720 > th dose independent rect. 5 2
8 166.65 temperature 25 720 < th dose independent rect. 24 12
10 167.05 temperature 25 720 > th dose independent rect. 3 5
27 168.35 temperature 25 720 > th dose independent rect. 24 14
29 168.40 temperature 20 10 > th dose dependent rect. 7 13
32 168.66 temperature 25 720 > th dose independent sin 5 NA
45 169.04 atmosphere 1000 720 < th dose dependent rect. 7 1
84 170.11 temperature 25 10 > th dose dependent rect. 13 23
108 170.54 atmosphere 1000 270 < th dose dependent rect. 5 8
110 170.55 temperature 15 270 > th dose dependent rect. 5 11
184 171.46 temperature 25 10 > th dose dependent rect. 7 18
193 171.52 temperature 20 10 > th dose dependent rect. 7 11
200 171.57 temperature 25 90 > th dose dependent sin 1 NA
214 171.64 temperature 25 10 > th dose dependent rect. 24 20
215 171.64 temperature 25 30 > th dose dependent rect. 19 23
217 171.65 temperature 25 720 < th dose dependent rect. 6 14
243 171.72 temperature 25 10 > th dose dependent rect. 24 22
262 171.82 temperature 25 720 < th dose dependent rect. 7 12
280 171.87 temperature 25 720 < th dose independent sin 6 NA
300 171.93 temperature 25 270 > th dose dependent sin 4 NA
309 171.95 temperature 25 10 > th dose dependent rect. 21 23
311 171.96 atmosphere 1010 90 < th dose dependent rect. 6 11
321 172.00 atmosphere 1010 10 < th dose dependent rect. 7 13
360 172.09 atmosphere 1010 90 < th dose dependent rect. 6 13
365 172.11 temperature 25 10 > th dose dependent no NA NA
390 172.18 atmosphere 1010 10 < th dose dependent rect. 7 11
403 172.22 temperature 25 30 > th dose dependent rect. 9 23
417 172.25 atmosphere 1000 10 < th dose dependent rect. 7 7
443 172.33 temperature 25 720 < th dose dependent sin 22 NA
463 172.41 wind 1 720 > th dose dependent rect. 11 1
478 172.44 atmosphere 1015 270 < th dose dependent rect. 4 12
497 172.49 temperature 25 720 < th dose dependent rect. 11 7
512 172.54 temperature 25 90 > th dose dependent rect. 2 15
514 172.55 atmosphere 1015 720 < th dose dependent rect. 5 3
544 172.61 temperature 25 10 > th dose dependent rect. 17 23
647 172.85 wind 5 720 > th dose independent rect. 10 2
674 172.89 wind 9 720 < th dose dependent rect. 5 9
686 172.92 temperature 30 720 < th dose dependent rect. 8 3
701 172.96 temperature 10 270 > th dose dependent rect. 3 22
708 172.99 atmosphere 1000 10 < th dose dependent rect. 7 5
716 173.02 wind 5 720 < th dose independent rect. 5 9
746 173.09 temperature 25 270 < th dose independent rect. 24 20
780 173.20 wind 3 720 > th dose dependent rect. 8 4
799 173.26 temperature 25 720 < th dose dependent rect. 12 3
811 173.27 radiation 30 90 > th dose dependent rect. 7 1
841 173.29 temperature 25 4320 > th dose dependent rect. 3 1
850 173.31 wind 9 720 < th dose dependent rect. 5 6
862 173.34 temperature 25 720 < th dose independent rect. 5 7
895 173.39 temperature 25 10 > th dose dependent rect. 11 23
908 173.42 wind 1 720 > th dose dependent rect. 4 9
911 173.43 temperature 25 720 < th dose dependent rect. 12 1
930 173.47 wind 7 720 < th dose dependent rect. 5 4