Os01g0133900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0133900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 555.84 | 1.11 | 7.55 | -2.91 | 4.83 | 3.37 | 2.17 | -2.43 | -1.23 | 8.14 | 79.04 | 1589 | 5.63 | 8.63 |
| 561.18 | 1.1 | 7.53 | -2.71 | 4.85 | 3.15 | 1.92 | -- | -1.19 | 8.17 | 79.32 | 1581 | 5.75 | 8.67 |
| 569.48 | 1.11 | 7.55 | -2.81 | 4.83 | 3.38 | -- | -1.89 | -1.23 | 8.13 | 79.16 | 1589 | 5.58 | 8.68 |
| 571.66 | 1.11 | 7.52 | -2.65 | 4.85 | 3.18 | -- | -- | -1.17 | 8.14 | 79.29 | 1589 | 5.73 | 8.68 |
| 1194.76 | 1.62 | 7.59 | -2.04 | -- | 2.98 | -- | 0.123 | -0.866 | -- | 98.07 | 1441 | 5.65 | 7.35 |
| 704.05 | 1.24 | 7.46 | -2.25 | 5.09 | -- | 1.8 | -- | -0.922 | 8.49 | -- | -- | -- | -- |
| 714.37 | 1.25 | 7.46 | -2.19 | 5.08 | -- | -- | -- | -0.923 | 8.49 | -- | -- | -- | -- |
| 875.79 | 1.38 | 7.8 | -0.99 | -- | 3.86 | -- | -- | -1.43 | -- | 148.8 | 1605 | 2.85 | 9.75 |
| 743.28 | 1.27 | 7.5 | -- | 4.84 | 3.06 | -- | -- | -0.94 | 8.19 | 81 | 1578 | 5.41 | 9.37 |
| 2159.47 | 2.17 | 7.59 | -2.17 | -- | -- | -- | -- | -0.873 | -- | -- | -- | -- | -- |
| 840.93 | 1.36 | 7.4 | -- | 5.07 | -- | -- | -- | -0.679 | 8.52 | -- | -- | -- | -- |
| 883.56 | 1.38 | 7.52 | -- | -- | 3.76 | -- | -- | -0.482 | -- | 145.6 | 1630 | 2.28 | 10 |
| 2283.53 | 2.23 | 7.54 | -- | -- | -- | -- | -- | -0.633 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 571.05 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 3 | 571.27 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 14 |
| 4 | 571.29 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 13 | 572.03 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 37 | 575.09 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 44 | 576.22 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 46 | 576.38 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 76 | 579.77 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 80 | 579.97 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 90 | 580.40 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 100 | 581.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 102 | 581.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 123 | 581.42 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 132 | 582.64 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 139 | 583.15 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 142 | 583.33 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 144 | 583.46 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 148 | 583.96 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 21 | 17 |
| 155 | 584.22 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 167 | 584.68 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 180 | 585.15 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 200 | 585.95 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 224 | 586.78 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 342 | 589.59 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 3 | 13 |
| 426 | 591.87 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 453 | 592.32 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 5 |
| 492 | 592.85 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 523 | 593.31 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 8 | 8 |
| 525 | 593.36 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 534 | 593.45 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 577 | 594.23 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 21 |
| 584 | 594.40 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 597 | 594.62 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 22 |
| 652 | 595.65 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 691 | 596.02 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 692 | 596.02 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 708 | 596.19 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 719 | 596.26 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 725 | 596.30 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 728 | 596.31 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 762 | 596.46 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 774 | 596.49 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 798 | 596.60 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 801 | 596.60 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 805 | 596.61 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 823 | 596.65 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 854 | 596.83 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 19 |
| 862 | 596.87 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 866 | 596.93 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 877 | 597.05 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 881 | 597.10 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 890 | 597.15 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 893 | 597.17 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 901 | 597.23 | humidity | 70.0 | 1440 | < th | dose independent | no | NA | NA |
| 989 | 597.44 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |