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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0133200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.0787) R2 : 0.26
β1 : -4.21 (0.459) R2dD : 0.681 R2D : -0.383
β2 : 0.739 (0.146) R2dC : 0.0421 R2C : -0.0281
β3 : 2.09 (0.223) R2dE : 0.221 R2E : -0.0634
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.99 (1.44) R2dD*E : 0.371 R2D*E : -0.393
γ1 : -0.413 (0.166) R2dN8 : 0.0251 R2N8 : -0.102
σ : 1.07
deviance : 525.41
__
_____
C
peak time of C : 7.91
E
wheather : temperature
threshold : 26.99
memory length : 5342
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
523.67 1.08 4 -4.18 0.738 2.09 -0.815 -10 -0.407 8.22 26.9 5319 -- --
549.37 1.09 3.82 -3.9 0.582 2.81 -0.632 -- -0.491 9.39 18.91 31432 -- --
525.41 1.07 4.01 -4.21 0.739 2.09 -- -9.99 -0.413 7.91 26.99 5342 -- --
545.69 1.09 3.81 -4.23 0.577 3.15 -- -- -0.551 8.26 18.7 34892 -- --
547.39 1.09 4.02 -4.4 -- 2.05 -- -10.1 -0.491 -- 28.16 5698 -- --
633.29 1.18 3.59 -0.895 0.629 -- -0.466 -- 0.536 7.72 -- -- -- --
633.77 1.18 3.59 -0.909 0.634 -- -- -- 0.535 7.43 -- -- -- --
566.65 1.11 3.85 -4.12 -- 3.11 -- -- -0.525 -- 18.65 34802 -- --
653.95 1.2 3.57 -- 0.623 0.286 -- -- 0.618 7.36 18.7 34892 -- --
655.23 1.2 3.61 -0.899 -- -- -- -- 0.545 -- -- -- -- --
655.56 1.2 3.57 -- 0.626 -- -- -- 0.636 7.53 -- -- -- --
664.5 1.2 3.61 -- -- 0.423 -- -- 0.538 -- 22 47520 -- --
676.56 1.21 3.58 -- -- -- -- -- 0.645 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 515.80 temperature 25 4320 > th dose independent rect. 9 1
2 516.81 temperature 25 4320 < th dose independent rect. 7 3
3 516.84 temperature 25 4320 > th dose independent rect. 7 3
6 517.05 humidity 90 43200 > th dose dependent rect. 20 4
7 517.28 temperature 25 4320 < th dose independent rect. 9 1
8 517.29 humidity 90 43200 > th dose dependent rect. 17 8
10 517.35 humidity 90 43200 > th dose independent rect. 13 12
12 517.39 humidity 90 43200 > th dose dependent rect. 13 12
18 517.55 humidity 90 43200 > th dose independent sin 17 NA
27 517.82 humidity 90 43200 > th dose dependent sin 17 NA
28 517.83 humidity 90 43200 > th dose independent rect. 17 7
41 518.37 humidity 90 43200 < th dose independent rect. 9 19
44 518.50 humidity 90 43200 > th dose dependent rect. 10 17
45 518.52 humidity 90 43200 > th dose independent rect. 10 17
46 518.55 humidity 90 43200 > th dose dependent rect. 9 19
50 518.65 humidity 90 43200 > th dose independent rect. 21 1
52 518.69 humidity 90 43200 < th dose independent sin 17 NA
56 518.72 humidity 90 43200 > th dose independent rect. 9 19
76 519.16 humidity 90 43200 < th dose independent rect. 14 11
79 519.22 humidity 90 43200 > th dose independent rect. 18 4
85 519.35 humidity 80 43200 > th dose independent rect. 13 1
87 519.38 humidity 90 43200 < th dose independent rect. 12 14
103 519.78 humidity 80 43200 < th dose independent rect. 13 2
121 520.03 temperature 25 4320 > th dose dependent rect. 9 1
172 520.98 humidity 90 43200 < th dose independent rect. 21 1
177 521.09 humidity 90 43200 > th dose dependent rect. 12 23
199 521.38 humidity 90 43200 > th dose dependent no NA NA
210 521.50 humidity 90 43200 > th dose dependent rect. 19 23
216 521.55 humidity 90 43200 > th dose dependent rect. 16 23
222 521.60 humidity 90 43200 > th dose dependent rect. 2 23
234 521.75 humidity 90 43200 > th dose dependent rect. 23 23
235 521.78 humidity 90 43200 > th dose independent rect. 18 1
318 522.59 humidity 90 43200 < th dose independent rect. 18 1
333 522.76 humidity 90 43200 > th dose independent rect. 12 23
345 522.86 humidity 90 43200 > th dose independent no NA NA
350 522.93 humidity 90 43200 > th dose independent rect. 16 23
356 523.00 humidity 90 43200 < th dose independent rect. 23 23
365 523.07 humidity 90 43200 < th dose independent rect. 17 5
375 523.16 humidity 90 43200 > th dose independent rect. 2 23
379 523.18 humidity 90 43200 > th dose independent rect. 18 23
383 523.21 humidity 90 43200 > th dose independent rect. 20 23
388 523.25 humidity 90 43200 < th dose independent no NA NA
389 523.25 humidity 90 43200 < th dose independent rect. 14 23
393 523.27 humidity 90 43200 > th dose independent rect. 23 23
399 523.29 humidity 90 43200 < th dose independent rect. 12 23
401 523.32 humidity 90 43200 < th dose independent rect. 16 23
411 523.35 humidity 90 43200 < th dose independent rect. 2 23
442 523.67 humidity 90 43200 < th dose independent rect. 21 23
534 524.46 wind 5 43200 > th dose dependent rect. 14 1
563 524.73 radiation 20 43200 < th dose independent rect. 19 13
566 524.76 radiation 20 43200 < th dose independent rect. 5 3
569 524.77 radiation 20 43200 < th dose independent rect. 23 9
575 524.78 wind 5 43200 > th dose dependent rect. 13 3
609 525.15 humidity 90 43200 < th dose independent rect. 20 4
647 525.41 wind 7 43200 < th dose independent rect. 14 2
649 525.41 humidity 90 43200 > th dose dependent sin 6 NA
712 525.94 temperature 20 43200 > th dose dependent rect. 6 1
719 525.99 wind 7 43200 > th dose independent rect. 14 2
721 526.00 radiation 10 43200 > th dose dependent rect. 6 1
832 527.00 humidity 80 43200 > th dose dependent rect. 13 2
852 527.23 temperature 25 43200 > th dose independent rect. 8 2
873 527.41 temperature 25 43200 < th dose independent rect. 8 2
906 527.69 humidity 90 43200 > th dose dependent rect. 2 9
936 527.89 temperature 20 43200 > th dose dependent rect. 22 1