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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0132200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0471) R2 : 1.52e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000826 (0.0992) R2dN8 : 1.96e-07 R2N8 : 1.52e-07
σ : 0.888
deviance : 361.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
328.71 0.852 3.04 -0.0032 0.173 20.6 -0.614 -75.6 0.0355 11.4 1.002 89 15.9 1.9
410.61 0.944 2.83 0.696 0.577 11.5 1.17 -- 0.584 6.7 0.9013 98 15.9 1.69
330.31 0.846 3.04 -0.0289 0.178 20.6 -- -75.5 0.0326 10.9 1.003 86 15.9 1.9
365.17 0.89 3 0.518 0.104 10.9 -- -- 0.0992 6.45 1.022 100 15.9 1.73
332.27 0.849 3.05 -0.0321 -- 20.5 -- -75.2 0.0311 -- 0.9882 87 15.9 1.9
357.78 0.887 3 0.167 0.166 -- -0.623 -- 0.0202 12.4 -- -- -- --
359.44 0.888 3 0.143 0.169 -- -- -- 0.0168 12 -- -- -- --
341.91 0.861 2.98 0.18 -- 7 -- -- 0.337 -- 1.2 100 15.9 1.21
340.52 0.859 2.94 -- 0.342 5.96 -- -- 0.0607 5.16 0.9752 93 15.9 1.72
361.23 0.888 3.01 0.137 -- -- -- -- 0.0144 -- -- -- -- --
359.97 0.888 3.01 -- 0.167 -- -- -- 0.000893 12 -- -- -- --
331.67 0.848 3 -- -- 5.42 -- -- 0.02 -- 1.238 98 15.9 1.68
361.73 0.888 3.01 -- -- -- -- -- -0.000826 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 330.84 wind 1.0 90 < th dose dependent rect. 16 2
4 330.96 wind 1.0 90 < th dose independent rect. 16 2
9 338.17 radiation 1.0 10 < th dose independent rect. 7 5
11 338.17 radiation 1.0 10 < th dose dependent rect. 7 5
13 339.23 radiation 1.0 90 < th dose independent rect. 10 1
15 339.23 radiation 1.0 90 < th dose dependent rect. 10 1
19 340.26 temperature 25.0 10 < th dose dependent rect. 16 1
24 341.24 radiation 10.0 10 < th dose dependent rect. 10 2
28 341.71 radiation 1.0 10 < th dose independent rect. 11 1
62 341.72 temperature 30.0 10 < th dose independent rect. 3 23
67 341.88 temperature 20.0 720 < th dose independent rect. 5 3
68 341.89 temperature 25.0 10 < th dose independent rect. 15 1
88 342.62 temperature 30.0 720 < th dose dependent rect. 4 4
104 343.39 atmosphere 1005.0 10 > th dose dependent rect. 15 1
147 344.74 humidity 90.0 270 > th dose independent rect. 15 1
148 344.74 humidity 90.0 270 > th dose dependent rect. 15 1
157 344.95 humidity 60.0 14400 > th dose independent rect. 6 2
166 345.19 temperature 20.0 720 > th dose independent rect. 5 6
195 345.66 radiation 1.0 1440 > th dose independent rect. 9 1
199 345.71 humidity 60.0 14400 > th dose independent rect. 21 11
205 345.83 temperature 20.0 720 > th dose independent rect. 5 4
221 346.06 precipitation 0.1 43200 > th dose independent rect. 1 1
222 346.06 precipitation 0.1 43200 > th dose dependent rect. 1 1
223 346.10 precipitation 0.1 43200 < th dose independent rect. 1 1
224 346.10 precipitation 0.1 43200 < th dose dependent rect. 1 1
228 346.16 precipitation 0.1 270 > th dose independent rect. 14 2
231 346.16 precipitation 0.1 270 > th dose dependent rect. 14 2
232 346.20 humidity 60.0 14400 > th dose independent rect. 21 1
233 346.21 humidity 60.0 14400 < th dose independent rect. 6 1
235 346.21 humidity 60.0 14400 < th dose independent rect. 20 1
237 346.21 radiation 20.0 14400 > th dose independent rect. 17 1
289 346.21 humidity 60.0 14400 < th dose dependent rect. 6 1
291 346.21 humidity 60.0 14400 < th dose dependent rect. 20 1
293 346.21 radiation 20.0 14400 > th dose dependent rect. 17 1
346 346.24 humidity 80.0 14400 > th dose independent rect. 19 2
349 346.28 humidity 80.0 14400 < th dose independent rect. 18 15
352 346.31 radiation 40.0 4320 > th dose dependent rect. 15 1
372 346.35 temperature 20.0 720 > th dose independent rect. 6 1
383 346.41 humidity 90.0 14400 < th dose dependent rect. 20 1
384 346.42 humidity 80.0 14400 > th dose independent rect. 18 14
393 346.46 humidity 90.0 14400 < th dose dependent rect. 20 13
394 346.48 humidity 90.0 14400 < th dose dependent rect. 24 9
395 346.49 radiation 40.0 14400 < th dose independent rect. 16 1
399 346.52 humidity 80.0 14400 < th dose independent rect. 19 2
408 346.56 temperature 30.0 10 > th dose independent rect. 16 21
409 346.57 radiation 20.0 10 < th dose independent rect. 12 1
411 346.57 temperature 30.0 10 > th dose independent rect. 14 23
414 346.59 humidity 90.0 14400 < th dose dependent rect. 6 2
465 346.74 humidity 90.0 14400 < th dose dependent rect. 3 5
471 346.77 wind 1.0 43200 < th dose dependent rect. 18 4
476 346.79 humidity 80.0 14400 > th dose independent sin 10 NA
483 346.82 humidity 80.0 14400 < th dose independent sin 10 NA
484 346.82 humidity 80.0 14400 < th dose independent rect. 18 10
491 346.85 radiation 1.0 1440 < th dose independent rect. 9 2
492 346.85 humidity 80.0 14400 > th dose independent rect. 18 4
493 346.85 humidity 80.0 14400 < th dose independent rect. 18 4
499 346.85 radiation 1.0 1440 < th dose dependent rect. 9 2
503 346.86 humidity 80.0 14400 < th dose independent rect. 18 6
505 346.87 humidity 50.0 14400 > th dose dependent rect. 20 1
508 346.88 radiation 40.0 4320 > th dose independent rect. 15 1
527 346.90 radiation 40.0 43200 > th dose dependent rect. 15 1
546 346.91 temperature 15.0 720 > th dose dependent rect. 3 6
550 346.92 humidity 90.0 14400 < th dose dependent sin 9 NA
560 346.96 humidity 80.0 14400 > th dose independent rect. 18 10
572 346.99 humidity 80.0 14400 > th dose independent rect. 5 3
581 347.03 temperature 20.0 720 < th dose independent sin 2 NA
590 347.05 wind 1.0 43200 < th dose independent rect. 18 4
601 347.07 humidity 80.0 14400 < th dose independent rect. 5 3
608 347.08 humidity 90.0 270 > th dose dependent rect. 12 4
621 347.11 radiation 1.0 1440 > th dose independent rect. 9 3
627 347.12 temperature 20.0 720 > th dose dependent rect. 6 1
650 347.22 humidity 60.0 14400 > th dose independent rect. 24 8
661 347.24 wind 7.0 10 > th dose independent rect. 15 1
666 347.24 humidity 90.0 14400 < th dose dependent rect. 19 9
706 347.34 temperature 25.0 10 > th dose independent rect. 20 21
737 347.40 wind 1.0 43200 < th dose independent rect. 20 1
739 347.41 humidity 60.0 14400 > th dose independent rect. 20 7
740 347.42 humidity 80.0 14400 > th dose independent rect. 2 6
741 347.42 temperature 15.0 14400 < th dose dependent rect. 23 2
749 347.43 temperature 15.0 14400 < th dose dependent rect. 1 1
750 347.43 humidity 50.0 14400 < th dose dependent rect. 9 1
756 347.43 temperature 10.0 720 > th dose dependent rect. 3 8
760 347.44 temperature 30.0 10 < th dose independent rect. 13 23
768 347.45 humidity 50.0 14400 < th dose independent rect. 9 1
795 347.49 temperature 30.0 10 > th dose independent sin 23 NA
801 347.49 temperature 30.0 10 > th dose independent rect. 11 23
835 347.51 radiation 1.0 4320 > th dose dependent rect. 18 11
844 347.53 temperature 30.0 10 > th dose independent no NA NA
845 347.53 temperature 30.0 10 > th dose independent rect. 9 10
955 347.54 wind 1.0 30 < th dose independent rect. 7 1
961 347.54 radiation 1.0 4320 > th dose dependent rect. 18 1
982 347.56 radiation 40.0 14400 < th dose independent rect. 16 14
998 347.59 humidity 90.0 270 > th dose independent rect. 12 4