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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0132100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.51 (0.0428) R2 : 0.599
β1 : 0.957 (0.184) R2dD : 0.0376 R2D : 0.0815
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.44 (0.186) R2dE : 0.276 R2E : 0.468
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.851 (0.105) R2dN8 : 0.115 R2N8 : 0.194
σ : 0.761
deviance : 266.94
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 12.85
memory length : 9925
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
254.15 0.749 5.65 -0.593 0.549 2.55 1.12 -10.8 1.09 5.45 25.66 4211 -- --
250.08 0.737 5.51 0.871 0.496 2.46 1.33 -- 0.824 5.78 6.171 9785 -- --
256.8 0.746 5.65 -0.55 0.557 2.54 -- -10.9 1.11 5.04 25.82 4180 -- --
251.93 0.739 5.5 0.984 0.541 2.38 -- -- 0.87 4.58 11.81 10002 -- --
272.91 0.769 5.66 -0.695 -- 2.73 -- -11.8 1.14 -- 26.14 4160 -- --
343.6 0.869 5.33 2.35 0.618 -- 0.909 -- 1.62 4.64 -- -- -- --
345.5 0.87 5.33 2.35 0.623 -- -- -- 1.61 4.23 -- -- -- --
266.94 0.761 5.51 0.957 -- 2.44 -- -- 0.851 -- 12.85 9925 -- --
264.24 0.757 5.59 -- 0.623 2.85 -- -- 0.474 4.52 12 13680 -- --
366.51 0.895 5.34 2.37 -- -- -- -- 1.63 -- -- -- -- --
490.63 1.04 5.39 -- 0.668 -- -- -- 1.35 4.16 -- -- -- --
281.24 0.781 5.57 -- -- 2.94 -- -- 0.602 -- 10.1 11329 -- --
514.86 1.06 5.4 -- -- -- -- -- 1.37 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 238.43 wind 1 43200 < th dose dependent rect. 10 20
2 238.55 wind 1 43200 < th dose dependent rect. 8 22
6 243.80 radiation 1 14400 > th dose independent rect. 18 11
8 244.70 wind 3 14400 > th dose dependent rect. 10 1
11 245.07 radiation 1 14400 > th dose independent rect. 18 1
21 245.20 wind 3 43200 < th dose dependent rect. 8 1
22 245.51 wind 1 43200 < th dose dependent rect. 17 20
23 245.72 wind 5 14400 < th dose independent rect. 10 1
24 245.80 wind 5 14400 > th dose independent rect. 10 1
25 246.03 wind 1 43200 < th dose dependent rect. 12 17
26 246.06 wind 1 43200 < th dose dependent rect. 17 22
28 246.34 wind 1 43200 < th dose dependent rect. 19 18
29 246.39 wind 1 43200 < th dose dependent rect. 14 22
45 247.26 wind 1 43200 < th dose dependent rect. 19 20
50 247.75 radiation 1 43200 < th dose dependent rect. 2 3
52 247.93 wind 3 43200 < th dose independent rect. 8 2
53 247.97 radiation 1 43200 < th dose dependent rect. 4 1
71 249.40 wind 1 43200 < th dose dependent rect. 3 23
76 249.77 humidity 80 43200 > th dose independent rect. 2 1
82 250.23 wind 1 43200 < th dose dependent no NA NA
83 250.27 wind 3 43200 > th dose independent rect. 8 4
95 250.51 wind 3 14400 > th dose dependent rect. 9 3
97 250.57 wind 1 43200 < th dose dependent rect. 5 23
113 251.29 wind 1 43200 < th dose dependent rect. 21 23
114 251.34 radiation 1 43200 < th dose independent rect. 18 1
117 251.39 radiation 1 43200 < th dose independent rect. 18 10
125 251.53 wind 3 43200 > th dose independent rect. 21 1
126 251.58 temperature 25 4320 < th dose independent rect. 5 7
127 251.70 wind 5 14400 > th dose independent rect. 5 9
128 251.70 wind 5 14400 < th dose independent rect. 5 9
130 251.76 temperature 25 4320 > th dose dependent rect. 18 19
131 251.78 wind 3 43200 < th dose independent rect. 21 1
132 251.83 temperature 25 4320 > th dose independent rect. 5 7
151 252.05 wind 1 43200 < th dose dependent rect. 24 4
155 252.11 wind 5 43200 < th dose dependent rect. 21 1
161 252.23 wind 1 43200 < th dose dependent rect. 1 1
162 252.24 wind 3 43200 < th dose dependent rect. 3 1
176 252.44 temperature 25 14400 > th dose independent rect. 11 1
189 252.60 wind 5 43200 < th dose dependent rect. 8 4
190 252.66 temperature 25 4320 > th dose dependent rect. 5 8
194 252.68 wind 5 14400 < th dose independent rect. 24 14
195 252.70 temperature 25 14400 < th dose independent rect. 11 1
198 252.75 wind 5 14400 > th dose independent rect. 24 14
222 253.21 temperature 20 4320 > th dose dependent rect. 18 1
224 253.21 wind 1 43200 < th dose dependent rect. 24 23
238 253.60 temperature 20 14400 > th dose dependent rect. 16 3
241 253.63 temperature 20 4320 > th dose dependent rect. 6 1
247 253.73 temperature 20 4320 > th dose dependent rect. 5 4
252 253.78 temperature 25 14400 < th dose independent rect. 16 1
258 253.84 wind 5 14400 > th dose dependent rect. 23 15
272 253.98 temperature 25 4320 > th dose dependent sin 7 NA
273 253.98 wind 5 14400 > th dose dependent rect. 3 11
290 254.16 temperature 25 4320 > th dose dependent rect. 10 2
299 254.25 temperature 30 14400 < th dose dependent rect. 11 1
300 254.25 radiation 1 14400 < th dose dependent rect. 18 1
308 254.31 temperature 25 14400 > th dose independent rect. 16 1
315 254.36 radiation 1 1440 < th dose dependent rect. 18 11
328 254.46 humidity 80 43200 < th dose independent rect. 2 1
346 254.59 temperature 25 4320 > th dose dependent rect. 6 17
352 254.63 temperature 25 14400 > th dose independent rect. 10 8
353 254.63 temperature 20 14400 < th dose independent rect. 17 8
372 254.71 temperature 20 14400 < th dose independent rect. 16 10
391 254.78 temperature 30 14400 < th dose dependent rect. 18 1
400 254.82 temperature 20 14400 < th dose independent sin 16 NA
402 254.82 temperature 25 14400 < th dose independent rect. 10 8
410 254.86 temperature 20 14400 > th dose independent rect. 16 10
441 254.96 temperature 20 14400 > th dose independent rect. 17 8
451 254.98 temperature 20 14400 > th dose independent sin 15 NA
454 254.99 temperature 20 14400 < th dose independent rect. 11 19
458 255.01 temperature 20 14400 > th dose independent rect. 11 19
479 255.07 radiation 40 14400 < th dose dependent rect. 18 11
581 255.27 temperature 10 14400 > th dose dependent rect. 11 1
583 255.27 temperature 30 14400 < th dose dependent rect. 11 12
617 255.33 temperature 20 14400 < th dose independent rect. 18 1
632 255.34 temperature 30 14400 < th dose dependent rect. 11 9
646 255.36 temperature 25 4320 > th dose dependent no NA NA
702 255.45 temperature 25 14400 > th dose independent rect. 2 16
707 255.46 temperature 25 4320 > th dose independent rect. 6 3
741 255.49 temperature 25 14400 < th dose independent rect. 2 16
762 255.52 temperature 25 14400 < th dose independent rect. 4 14
763 255.52 temperature 30 14400 < th dose dependent sin 18 NA
773 255.53 temperature 15 14400 > th dose dependent sin 17 NA
779 255.54 temperature 25 4320 < th dose independent rect. 6 2
855 255.61 temperature 30 14400 < th dose dependent rect. 16 7