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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0130900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0491) R2 : 0.485
β1 : -1.19 (0.181) R2dD : 0.0514 R2D : 0.00322
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.86 (0.0922) R2dE : 0.47 R2E : 0.418
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.448 (0.105) R2dN8 : 0.0277 R2N8 : -0.00682
σ : 0.919
deviance : 389
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.42
memory length : 57
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 10.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
369.61 0.903 11.4 -1.4 0.305 1.74 0.772 -2.1 -0.538 2.9 19.5 37 18.5 10.6
382.56 0.911 11.3 -1.27 0.00478 1.88 -1.61 -- -0.506 21.5 19.5 48 18.5 10.6
370.98 0.897 11.3 -1.38 0.309 1.73 -- -1.8 -0.526 2.22 19.46 38 18.5 10.6
387.2 0.916 11.3 -1.17 0.249 1.73 -- -- -0.482 1.94 19.4 41 18.5 10.6
374.2 0.901 11.3 -1.38 -- 1.84 -- -1.66 -0.515 -- 19.35 47 18.4 10.7
512.93 1.06 11.3 -0.855 1.89 -- -0.222 -- -0.271 0.372 -- -- -- --
513.14 1.06 11.3 -0.847 1.89 -- -- -- -0.27 0.384 -- -- -- --
389 0.919 11.3 -1.19 -- 1.86 -- -- -0.448 -- 19.42 57 18.3 10.8
418.94 0.953 11.3 -- 0.353 1.65 -- -- -0.378 1.07 19.89 38 18.5 10.6
736.95 1.27 11.3 -0.783 -- -- -- -- -0.24 -- -- -- -- --
532.04 1.08 11.3 -- 1.88 -- -- -- -0.176 0.361 -- -- -- --
423.68 0.959 11.3 -- -- 1.81 -- -- -0.344 -- 19.72 55 18.4 10.7
753.12 1.28 11.2 -- -- -- -- -- -0.153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 377.92 temperature 20.0 30 > th dose independent rect. 18 11
4 383.52 radiation 10.0 720 < th dose independent rect. 16 11
6 388.73 radiation 10.0 720 < th dose independent rect. 16 4
10 391.91 radiation 10.0 720 < th dose independent rect. 14 6
12 393.49 radiation 10.0 720 < th dose independent rect. 14 14
19 398.57 radiation 20.0 720 < th dose dependent rect. 17 10
29 401.40 radiation 40.0 720 < th dose dependent rect. 15 14
30 401.95 radiation 40.0 720 < th dose dependent rect. 15 5
31 402.37 radiation 30.0 720 < th dose independent rect. 15 14
45 409.16 radiation 10.0 720 < th dose dependent rect. 17 2
55 412.39 humidity 50.0 720 > th dose independent rect. 17 10
69 414.83 temperature 20.0 720 > th dose independent rect. 17 3
82 416.23 precipitation 0.1 720 < th dose independent rect. 3 14
83 416.23 precipitation 0.1 720 < th dose dependent rect. 3 14
90 416.63 wind 9.0 720 < th dose independent rect. 3 14
118 420.19 temperature 10.0 90 > th dose dependent rect. 18 11
123 420.64 radiation 1.0 90 < th dose independent rect. 17 12
125 420.81 radiation 10.0 720 < th dose dependent rect. 8 12
134 421.52 wind 9.0 720 < th dose independent rect. 5 10
137 421.85 temperature 20.0 30 > th dose independent rect. 11 18
149 423.06 precipitation 0.1 720 < th dose independent rect. 5 10
150 423.06 precipitation 0.1 720 < th dose dependent rect. 5 10
158 423.78 radiation 1.0 90 < th dose dependent rect. 17 12
164 424.29 radiation 10.0 720 < th dose independent sin 15 NA
186 425.64 wind 9.0 720 < th dose independent rect. 20 21
189 425.75 wind 9.0 720 < th dose independent rect. 5 19
191 425.90 radiation 10.0 720 < th dose dependent rect. 8 20
198 426.36 humidity 50.0 90 > th dose dependent rect. 17 12
202 426.56 wind 9.0 720 < th dose independent rect. 12 20
203 426.60 precipitation 0.1 720 < th dose independent rect. 12 20
204 426.60 precipitation 0.1 720 < th dose dependent rect. 12 20
205 426.64 humidity 50.0 720 > th dose independent rect. 17 2
207 426.90 radiation 1.0 90 < th dose independent rect. 7 22
214 426.98 precipitation 0.1 720 < th dose independent rect. 5 19
215 426.98 precipitation 0.1 720 < th dose dependent rect. 5 19
221 427.25 radiation 10.0 720 < th dose dependent rect. 24 20
223 427.42 radiation 1.0 90 < th dose dependent rect. 7 22
226 427.58 humidity 50.0 720 > th dose independent rect. 17 19
230 427.74 temperature 10.0 720 > th dose independent rect. 5 10
231 427.74 atmosphere 1015.0 720 < th dose independent rect. 5 10
232 427.74 temperature 10.0 720 > th dose independent rect. 15 14
233 427.81 temperature 20.0 30 > th dose independent rect. 8 21
235 428.01 temperature 10.0 720 > th dose independent rect. 17 10
238 428.01 temperature 10.0 720 > th dose independent rect. 3 14
239 428.03 temperature 20.0 90 < th dose independent rect. 16 17
241 428.16 precipitation 0.1 90 < th dose independent rect. 5 13
242 428.16 precipitation 0.1 90 < th dose dependent rect. 5 13
255 428.63 radiation 1.0 720 > th dose independent rect. 12 5
256 428.66 temperature 20.0 90 < th dose independent sin 10 NA
284 429.56 atmosphere 1010.0 90 < th dose independent rect. 18 11
285 429.56 wind 7.0 270 < th dose independent rect. 20 12
293 429.71 humidity 70.0 720 > th dose independent rect. 17 1
307 430.16 temperature 20.0 30 > th dose independent rect. 21 8
310 430.27 temperature 20.0 30 > th dose independent rect. 1 4
311 430.34 temperature 20.0 90 < th dose independent rect. 21 12
312 430.34 humidity 50.0 720 > th dose dependent rect. 17 3
315 430.41 radiation 10.0 720 > th dose independent rect. 12 20
319 430.59 radiation 1.0 90 < th dose dependent rect. 17 20
327 430.88 radiation 1.0 90 < th dose dependent rect. 17 17
332 430.93 wind 9.0 720 < th dose independent rect. 12 5
337 431.03 atmosphere 995.0 720 > th dose independent rect. 17 10
359 431.68 precipitation 0.1 720 < th dose independent rect. 20 21
360 431.68 precipitation 0.1 720 < th dose dependent rect. 20 21
373 431.94 wind 7.0 720 < th dose independent rect. 20 4
376 432.06 radiation 10.0 720 > th dose independent rect. 14 1
378 432.07 temperature 20.0 90 < th dose independent rect. 19 14
402 432.58 temperature 20.0 90 > th dose independent sin 12 NA
412 432.87 temperature 30.0 270 < th dose dependent rect. 20 11
423 433.12 temperature 20.0 90 < th dose independent rect. 19 12
443 433.44 atmosphere 1015.0 720 < th dose independent rect. 3 14
454 433.64 wind 9.0 90 < th dose independent rect. 5 13
464 433.76 radiation 1.0 90 < th dose independent rect. 17 20
485 434.07 radiation 1.0 90 < th dose independent rect. 17 17
487 434.07 radiation 1.0 90 < th dose dependent no NA NA
491 434.08 radiation 1.0 90 < th dose dependent rect. 9 23
497 434.16 radiation 10.0 720 > th dose independent rect. 12 3
498 434.16 precipitation 0.1 720 < th dose independent rect. 12 5
500 434.16 precipitation 0.1 720 < th dose dependent rect. 12 5
519 434.42 temperature 20.0 90 < th dose independent rect. 13 20
626 436.42 radiation 1.0 720 > th dose dependent rect. 12 19
661 436.66 precipitation 0.1 270 < th dose independent rect. 20 12
662 436.66 precipitation 0.1 270 < th dose dependent rect. 20 12
689 436.93 radiation 1.0 90 < th dose dependent rect. 24 23
722 437.38 temperature 30.0 90 < th dose independent rect. 17 12
758 437.75 atmosphere 995.0 90 > th dose independent rect. 18 11
763 437.87 humidity 60.0 90 > th dose independent rect. 17 12
769 437.88 precipitation 0.1 270 < th dose independent rect. 12 12
770 437.88 temperature 10.0 90 > th dose independent rect. 5 13
771 437.88 atmosphere 1015.0 90 < th dose independent rect. 5 13
772 437.88 precipitation 0.1 270 < th dose dependent rect. 12 12
783 438.00 temperature 20.0 90 > th dose independent rect. 18 20
823 438.40 radiation 1.0 720 > th dose dependent rect. 12 4
830 438.50 atmosphere 995.0 720 > th dose independent rect. 17 3
871 438.71 radiation 1.0 720 > th dose dependent rect. 14 1
883 438.80 wind 9.0 90 < th dose independent rect. 18 11
895 438.86 precipitation 0.1 720 < th dose independent rect. 5 3
897 438.86 precipitation 0.1 720 < th dose dependent rect. 5 3
907 438.96 radiation 1.0 30 > th dose independent no NA NA
908 438.96 radiation 1.0 30 > th dose independent rect. 5 14
972 439.00 radiation 1.0 30 < th dose independent no NA NA
993 439.12 wind 9.0 720 < th dose independent rect. 3 22