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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0130500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alpha-xylosidase precursor (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0339) R2 : 0.00136
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0562 (0.0714) R2dN8 : 0.00175 R2N8 : 0.00136
σ : 0.639
deviance : 187.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.32 0.615 2.92 -0.454 0.184 -0.165 -1.01 1.91 -0.147 3.8 40 10183 -- --
176.51 0.619 2.95 -0.441 0.18 -0.147 -0.965 -- -0.142 3.5 60.74 8492 -- --
174.19 0.615 2.92 -0.458 0.182 -0.168 -- 2 -0.148 3.8 39.99 10062 -- --
175.23 0.617 2.94 -0.175 0.204 -0.502 -- -- -0.0456 3.62 62.79 10144 -- --
175.9 0.618 2.92 -0.439 -- -0.172 -- 1.91 -0.148 -- 39.99 10062 -- --
179.58 0.628 2.95 -0.363 0.176 -- -0.993 -- -0.104 3.79 -- -- -- --
182.45 0.633 2.94 -0.348 0.176 -- -- -- -0.0986 4.46 -- -- -- --
176.85 0.619 2.93 -0.125 -- -0.531 -- -- -0.0216 -- 63.86 9751 -- --
175.27 0.617 2.92 -- 0.183 -0.583 -- -- 0.00799 4.42 69.26 9312 -- --
184.1 0.634 2.95 -0.341 -- -- -- -- -0.094 -- -- -- -- --
185.64 0.637 2.94 -- 0.169 -- -- -- -0.0599 4.51 -- -- -- --
176.61 0.619 2.92 -- -- -0.607 -- -- 0.0118 -- 69.38 8492 -- --
187.17 0.639 2.94 -- -- -- -- -- -0.0562 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.17 radiation 1 90 < th dose independent rect. 8 3
2 163.17 radiation 1 90 < th dose dependent rect. 8 3
11 167.75 radiation 40 4320 > th dose dependent rect. 15 1
29 168.14 radiation 40 4320 > th dose independent rect. 15 1
46 168.67 humidity 50 1440 > th dose independent rect. 17 3
48 168.71 humidity 50 1440 > th dose independent rect. 17 9
50 168.78 humidity 50 1440 < th dose independent rect. 17 17
51 168.79 humidity 50 1440 < th dose dependent rect. 17 17
57 168.82 humidity 50 1440 < th dose dependent rect. 17 1
73 168.86 humidity 50 1440 < th dose independent rect. 17 1
90 168.87 humidity 50 1440 < th dose dependent rect. 16 19
92 168.88 humidity 50 1440 > th dose independent rect. 17 16
97 168.92 humidity 80 14400 > th dose independent rect. 2 1
226 169.37 humidity 90 43200 < th dose independent rect. 22 3
402 169.71 humidity 90 43200 > th dose dependent rect. 23 1
405 169.73 radiation 1 14400 < th dose dependent rect. 9 1
407 169.74 temperature 15 14400 < th dose dependent rect. 4 1
420 169.77 radiation 20 14400 < th dose independent rect. 17 14
451 169.85 humidity 90 43200 > th dose independent rect. 23 2
465 169.97 humidity 90 43200 > th dose independent rect. 21 5
469 170.04 atmosphere 1000 90 < th dose independent rect. 18 2
470 170.04 radiation 20 14400 < th dose independent rect. 22 9
471 170.04 atmosphere 1000 90 < th dose dependent rect. 18 2
479 170.07 radiation 20 14400 < th dose independent rect. 19 12
489 170.08 radiation 20 14400 < th dose independent rect. 1 6
503 170.08 humidity 90 43200 > th dose dependent rect. 21 7
511 170.11 wind 1 43200 < th dose dependent rect. 7 1
519 170.13 humidity 90 43200 < th dose independent rect. 18 12
527 170.17 radiation 20 14400 < th dose independent rect. 5 2
605 170.29 radiation 1 4320 > th dose independent rect. 9 1
606 170.29 temperature 15 43200 < th dose dependent rect. 11 1
626 170.32 humidity 90 43200 > th dose independent rect. 19 11
641 170.36 humidity 80 43200 > th dose dependent rect. 18 7
670 170.44 humidity 90 43200 > th dose independent rect. 21 1
673 170.44 humidity 80 43200 > th dose dependent rect. 17 9
679 170.48 humidity 60 14400 > th dose independent rect. 15 1
687 170.49 wind 1 43200 > th dose independent rect. 16 1
693 170.50 temperature 15 43200 < th dose dependent rect. 5 7
704 170.52 humidity 90 10 < th dose independent rect. 2 2
716 170.54 wind 1 43200 > th dose independent rect. 16 3
721 170.55 radiation 40 14400 < th dose dependent rect. 22 7
736 170.59 humidity 90 43200 < th dose independent sin 12 NA
737 170.59 wind 1 43200 < th dose independent rect. 16 1
743 170.60 humidity 60 14400 < th dose independent rect. 6 1
745 170.60 humidity 60 14400 < th dose independent rect. 20 1
747 170.60 radiation 20 14400 > th dose independent rect. 17 1
795 170.60 radiation 20 14400 < th dose independent rect. 17 11
799 170.60 humidity 90 43200 > th dose dependent rect. 3 1
800 170.60 humidity 60 14400 < th dose dependent rect. 6 1
802 170.60 humidity 60 14400 < th dose dependent rect. 20 1
804 170.60 radiation 20 14400 > th dose dependent rect. 17 1
979 170.64 temperature 15 43200 < th dose dependent sin 2 NA
994 170.66 humidity 90 90 < th dose dependent rect. 3 1