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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0130400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alpha-xylosidase precursor (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.1 (0.0783) R2 : 0.786
β1 : -4.41 (0.315) R2dD : 0.184 R2D : 0.102
β2 : 4.24 (0.158) R2dC : 0.349 R2C : 0.254
β3 : -2.38 (0.386) R2dE : 0.0443 R2E : -0.0282
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.8 (0.988) R2dD*E : 0.0888 R2D*E : -0.0716
γ1 : -2.47 (0.146) R2dN8 : 0.22 R2N8 : -0.00927
σ : 1.16
deviance : 623.29
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_____
C
peak time of C : 15.4
E
wheather : radiation
threshold : 9.958
memory length : 8797
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.1
open length of G : 16.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
615.45 1.17 8.1 -4.43 4.24 -2.41 -2.18 -11.1 -2.43 15.5 10 8785 15.2 15.1
694.28 1.23 7.63 -5.04 3.96 -1.73 -1.14 -- -2.17 15.4 10.2 11738 14.9 15.5
623.29 1.16 8.1 -4.41 4.24 -2.38 -- -10.8 -2.47 15.4 9.958 8797 15.1 16.3
686.31 1.22 7.65 -5.26 4.07 -2.15 -- -- -2.28 15.6 10.18 11709 15.5 15.3
1341.85 1.71 8.09 -4.36 -- -2.72 -- -9.73 -2.34 -- 22.23 10487 15.3 16.2
785.43 1.31 7.58 -5.66 4.37 -- -1.02 -- -1.89 15.4 -- -- -- --
788.66 1.32 7.58 -5.67 4.36 -- -- -- -1.89 15.3 -- -- -- --
824.82 1.34 7.8 -5.62 -- -4.39 -- -- -2.07 -- 89.72 12114 15.2 14.6
1355.63 1.71 7.67 -- 4.28 -2.33 -- -- -2.13 15 15.37 20238 15.4 15.6
1861.12 2.02 7.59 -5.86 -- -- -- -- -2.01 -- -- -- -- --
1637.38 1.89 7.44 -- 4.47 -- -- -- -1.26 15.3 -- -- -- --
1652.41 1.89 7.45 -- -- -4.55 -- -- -1.34 -- 107.3 10605 15.8 14.3
2766.75 2.46 7.44 -- -- -- -- -- -1.36 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 631.01 precipitation 0.1 43200 < th dose independent rect. 14 4
2 631.01 precipitation 0.1 43200 < th dose dependent rect. 14 4
3 631.17 precipitation 0.1 43200 > th dose independent rect. 14 4
10 632.80 precipitation 0.1 43200 > th dose dependent rect. 10 8
16 634.46 precipitation 0.1 43200 < th dose independent rect. 11 7
17 634.46 precipitation 0.1 43200 < th dose dependent rect. 11 7
21 634.85 precipitation 0.1 43200 > th dose independent rect. 11 7
29 635.46 radiation 40.0 14400 > th dose dependent rect. 12 2
39 636.52 radiation 40.0 14400 < th dose independent rect. 13 1
57 638.77 radiation 40.0 14400 > th dose independent rect. 13 1
60 639.68 radiation 10.0 14400 < th dose independent rect. 13 18
70 641.05 radiation 40.0 4320 < th dose dependent rect. 18 5
84 641.52 radiation 40.0 14400 > th dose dependent rect. 12 20
106 641.89 radiation 10.0 14400 < th dose independent rect. 13 10
110 641.90 radiation 10.0 14400 < th dose independent rect. 13 8
117 642.11 radiation 40.0 14400 < th dose independent rect. 12 20
124 643.43 radiation 10.0 14400 < th dose independent rect. 13 2
125 643.45 temperature 25.0 14400 > th dose dependent rect. 7 1
126 643.46 radiation 40.0 14400 < th dose independent rect. 12 11
130 643.46 radiation 40.0 14400 < th dose independent rect. 12 18
131 643.47 radiation 40.0 14400 < th dose independent rect. 12 9
140 643.54 radiation 40.0 14400 < th dose independent rect. 12 4
155 643.88 temperature 25.0 14400 < th dose independent rect. 6 1
173 644.37 temperature 25.0 14400 > th dose independent rect. 6 1
191 645.19 radiation 10.0 14400 < th dose independent sin 14 NA
195 645.29 radiation 20.0 14400 < th dose independent rect. 7 1
216 645.79 radiation 30.0 14400 < th dose independent rect. 17 16
217 645.81 precipitation 0.1 43200 > th dose dependent sin 21 NA
229 646.06 radiation 30.0 14400 < th dose independent rect. 4 5
261 646.39 temperature 10.0 270 > th dose dependent rect. 6 20
292 647.07 temperature 10.0 270 > th dose dependent rect. 7 18
328 647.53 wind 9.0 14400 > th dose dependent rect. 15 2
340 647.93 radiation 20.0 14400 > th dose independent rect. 15 17
351 648.15 radiation 40.0 14400 < th dose independent sin 15 NA
364 648.68 radiation 10.0 14400 < th dose independent rect. 18 13
412 649.20 radiation 20.0 14400 > th dose independent rect. 15 1
522 650.17 radiation 10.0 14400 < th dose independent rect. 4 19
523 650.17 radiation 10.0 14400 < th dose independent rect. 4 21
525 650.18 radiation 10.0 14400 < th dose independent no NA NA
526 650.18 radiation 10.0 14400 < th dose independent rect. 4 17
539 650.18 radiation 10.0 14400 < th dose independent rect. 22 23
541 650.19 radiation 10.0 14400 < th dose independent rect. 4 15
556 650.19 radiation 10.0 14400 < th dose independent rect. 20 23
608 650.41 humidity 60.0 43200 > th dose independent rect. 16 1
612 650.47 radiation 10.0 14400 > th dose dependent rect. 16 17
613 650.49 radiation 40.0 14400 < th dose independent rect. 15 23
615 650.52 radiation 40.0 14400 > th dose dependent sin 14 NA
671 650.92 radiation 10.0 14400 > th dose independent rect. 17 14
672 650.93 radiation 10.0 14400 < th dose independent rect. 16 23
691 651.04 radiation 40.0 14400 > th dose independent rect. 12 20
780 651.58 radiation 40.0 14400 < th dose independent rect. 7 16
781 651.58 radiation 40.0 14400 < th dose independent rect. 5 18
782 651.58 radiation 40.0 14400 < th dose independent rect. 7 18
793 651.58 radiation 40.0 14400 < th dose independent rect. 18 22
796 651.59 radiation 40.0 14400 < th dose independent no NA NA
798 651.59 radiation 40.0 14400 < th dose independent rect. 7 14
817 651.59 radiation 40.0 14400 < th dose independent rect. 24 21
825 651.59 radiation 40.0 14400 < th dose independent rect. 7 23
827 651.59 radiation 40.0 14400 < th dose independent rect. 22 23
829 651.60 temperature 25.0 14400 > th dose independent rect. 21 1
848 651.60 radiation 40.0 14400 < th dose independent rect. 20 23
861 651.61 radiation 40.0 14400 < th dose independent rect. 20 20
867 651.62 radiation 40.0 14400 < th dose independent rect. 5 11
874 651.63 radiation 40.0 14400 < th dose independent rect. 7 9
879 651.63 radiation 40.0 14400 < th dose independent rect. 24 16
880 651.63 radiation 40.0 14400 < th dose independent rect. 22 18
904 651.65 humidity 60.0 43200 < th dose independent rect. 16 1
905 651.65 radiation 40.0 14400 < th dose independent rect. 7 7
918 651.65 radiation 20.0 14400 > th dose dependent rect. 7 2
942 651.74 radiation 1.0 14400 > th dose dependent rect. 13 1
946 651.78 atmosphere 995.0 270 > th dose dependent rect. 11 10
963 651.98 humidity 90.0 43200 > th dose independent rect. 9 1