Os01g0130200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os01g0130200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 435.51 | 0.981 | 7.81 | -1.14 | 3.82 | -3.93 | -1.64 | -4.38 | 0.269 | 9.52 | 0.1678 | 4276 | -- | -- |
| 449.07 | 0.987 | 7.81 | -1.68 | 3.76 | -2.84 | -1.91 | -- | 0.268 | 9.48 | 0.1671 | 4278 | -- | -- |
| 445.12 | 0.983 | 7.81 | -1.1 | 3.89 | -4.14 | -- | -4.99 | 0.27 | 9.51 | 0.1721 | 4261 | -- | -- |
| 462.29 | 1 | 7.82 | -1.71 | 3.84 | -2.88 | -- | -- | 0.263 | 9.43 | 0.17 | 4275 | -- | -- |
| 849.22 | 1.36 | 7.94 | -0.949 | -- | -2.14 | -- | 2.38 | 0.548 | -- | 0.1721 | 4261 | -- | -- |
| 598.51 | 1.15 | 7.81 | -0.683 | 3.6 | -- | -1.97 | -- | 0.636 | 9.38 | -- | -- | -- | -- |
| 612.41 | 1.16 | 7.82 | -0.758 | 3.61 | -- | -- | -- | 0.633 | 9.33 | -- | -- | -- | -- |
| 885.7 | 1.39 | 7.93 | -0.882 | -- | -2.12 | -- | -- | 0.569 | -- | 0.17 | 4275 | -- | -- |
| 523.65 | 1.07 | 7.82 | -- | 3.85 | -2.15 | -- | -- | 0.306 | 9.34 | 1.68 | 4281 | -- | -- |
| 1374.48 | 1.73 | 7.91 | -0.775 | -- | -- | -- | -- | 0.647 | -- | -- | -- | -- | -- |
| 627.53 | 1.17 | 7.8 | -- | 3.61 | -- | -- | -- | 0.717 | 9.34 | -- | -- | -- | -- |
| 906.18 | 1.41 | 7.91 | -- | -- | -2.11 | -- | -- | 0.668 | -- | 0.17 | 4275 | -- | -- |
| 1390.33 | 1.74 | 7.89 | -- | -- | -- | -- | -- | 0.733 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 429.08 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 43 | 430.36 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 72 | 430.90 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 4 | NA |
| 202 | 432.74 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 234 | 432.94 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 250 | 433.06 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 355 | 433.28 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 358 | 433.29 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 378 | 433.37 | atmosphere | 1010 | 14400 | > th | dose dependent | no | NA | NA |
| 408 | 433.45 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 423 | 433.51 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 470 | 433.71 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 471 | 433.71 | radiation | 20 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 479 | 433.73 | radiation | 20 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 480 | 433.75 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 12 |
| 652 | 435.29 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 7 | NA |
| 674 | 435.53 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 7 | NA |
| 688 | 435.67 | radiation | 1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 738 | 436.07 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 805 | 436.81 | radiation | 30 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 813 | 436.85 | radiation | 30 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 823 | 436.89 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 3 | 13 |
| 847 | 437.03 | radiation | 30 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 881 | 437.26 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 902 | 437.49 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 3 | NA |
| 928 | 437.61 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 978 | 437.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 980 | 438.00 | radiation | 20 | 14400 | < th | dose independent | sin | 10 | NA |