Os01g0130100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0130100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.47 | 0.582 | 3.76 | -0.275 | 3.68 | 5.06 | 1.4 | 0.255 | 0.244 | 18.4 | 1.182 | 802 | -- | -- |
| 153.47 | 0.577 | 3.76 | -0.28 | 3.66 | 5.01 | 1.21 | -- | 0.244 | 18.4 | 1.287 | 801 | -- | -- |
| 153.99 | 0.578 | 3.77 | -0.35 | 3.38 | 4.6 | -- | -1.37 | 0.22 | 18.4 | 1.506 | 797 | -- | -- |
| 157.05 | 0.584 | 3.76 | -0.313 | 3.55 | 4.85 | -- | -- | 0.242 | 18.4 | 1.375 | 802 | -- | -- |
| 193.41 | 0.648 | 3.57 | -0.505 | -- | 0.977 | -- | -0.863 | 0.443 | -- | 3.371 | 5916 | -- | -- |
| 196.77 | 0.658 | 3.72 | -0.718 | 0.0507 | -- | -0.929 | -- | 0.0514 | 3.95 | -- | -- | -- | -- |
| 198.95 | 0.661 | 3.72 | -0.706 | 0.0829 | -- | -- | -- | 0.0567 | 23.8 | -- | -- | -- | -- |
| 183.57 | 0.631 | 3.68 | -0.593 | -- | 0.654 | -- | -- | 0.221 | -- | 34.83 | 1395 | -- | -- |
| 159.21 | 0.588 | 3.75 | -- | 3.75 | 5.16 | -- | -- | 0.289 | 18.5 | 1.138 | 806 | -- | -- |
| 199.38 | 0.66 | 3.71 | -0.704 | -- | -- | -- | -- | 0.0578 | -- | -- | -- | -- | -- |
| 212.11 | 0.681 | 3.7 | -- | 0.0751 | -- | -- | -- | 0.135 | 23.2 | -- | -- | -- | -- |
| 192.14 | 0.646 | 3.66 | -- | -- | 0.721 | -- | -- | 0.304 | -- | 55.33 | 1385 | -- | -- |
| 212.46 | 0.68 | 3.7 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.22 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 2 | 153.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 3 | 153.25 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 5 | 154.14 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 22 |
| 8 | 154.26 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 20 |
| 11 | 154.49 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 13 | 155.06 | radiation | 1 | 720 | > th | dose independent | sin | 23 | NA |
| 16 | 155.24 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 30 | 155.91 | radiation | 1 | 720 | < th | dose independent | sin | 0 | NA |
| 32 | 155.96 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 33 | 155.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 48 | 156.87 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 57 | 157.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 58 | 157.11 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 16 |
| 69 | 157.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 74 | 157.61 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 85 | 157.62 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 86 | 157.64 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 92 | 157.75 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 95 | 157.84 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 141 | 157.86 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 23 |
| 159 | 158.01 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 180 | 158.32 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 181 | 158.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 201 | 158.65 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 23 |
| 208 | 158.82 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 23 |
| 213 | 158.91 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 222 | 159.08 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 235 | 159.30 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 23 |
| 240 | 159.36 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 245 | 159.41 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 13 |
| 248 | 159.41 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 15 |
| 264 | 159.57 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 23 |
| 278 | 159.71 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 309 | 160.22 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 11 |
| 316 | 160.26 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 23 |
| 332 | 160.45 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 346 | 160.70 | humidity | 80 | 720 | > th | dose independent | sin | 23 | NA |
| 408 | 161.87 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 17 |
| 411 | 161.92 | humidity | 80 | 720 | < th | dose independent | sin | 1 | NA |
| 427 | 162.07 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 12 |
| 454 | 162.26 | humidity | 70 | 720 | > th | dose dependent | rect. | 6 | 15 |
| 476 | 162.54 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 477 | 162.54 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 478 | 162.54 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 539 | 162.99 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 549 | 163.10 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 570 | 163.28 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 572 | 163.29 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 2 |
| 604 | 163.59 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 614 | 163.67 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 655 | 163.94 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 10 |
| 661 | 163.99 | humidity | 70 | 720 | > th | dose dependent | sin | 22 | NA |
| 756 | 164.61 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 759 | 164.64 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 764 | 164.68 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 800 | 164.86 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 824 | 164.92 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 890 | 165.17 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 17 |
| 924 | 165.38 | radiation | 10 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 926 | 165.39 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 979 | 165.65 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 6 |
| 986 | 165.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 17 |