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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0128700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.45 (0.0409) R2 : 0.667
β1 : 1.32 (0.15) R2dD : 0.0587 R2D : 0.0321
β2 : 2.84 (0.0981) R2dC : 0.614 R2C : 0.604
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.342 (0.0872) R2dN8 : 0.015 R2N8 : -0.00167
σ : 0.768
deviance : 269.02
__
_____
C
peak time of C : 10.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
245.99 0.737 4.48 1.47 2.89 3.45 1.17 5.69 0.42 10.6 20.04 225 -- --
250.52 0.743 4.42 1.47 2.96 1.06 1.15 -- 0.458 10.6 22.38 52 -- --
251.63 0.739 4.48 1.53 2.88 3.56 -- 5.77 0.428 10.7 20.03 233 -- --
255.94 0.75 4.42 1.52 2.96 1.09 -- -- 0.465 10.6 22.38 52 -- --
710.65 1.24 4.53 1.45 -- 3.77 -- 5.89 0.507 -- 20.9 651 -- --
262.86 0.76 4.45 1.27 2.85 -- 1.23 -- 0.338 10.5 -- -- -- --
269.02 0.768 4.45 1.32 2.84 -- -- -- 0.342 10.5 -- -- -- --
653.85 1.19 4.43 1.95 -- 2.63 -- -- 0.737 -- 71 786 -- --
312.22 0.827 4.47 -- 2.88 0.46 -- -- 0.238 10.5 22.39 36 -- --
763.57 1.29 4.52 1.27 -- -- -- -- 0.33 -- -- -- -- --
314.77 0.83 4.48 -- 2.83 -- -- -- 0.195 10.5 -- -- -- --
744.19 1.27 4.5 -- -- 1.88 -- -- 0.424 -- 88.86 770 -- --
805.98 1.33 4.55 -- -- -- -- -- 0.189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 238.05 temperature 20.0 90 > th dose independent rect. 15 21
2 238.43 temperature 20.0 270 > th dose independent rect. 15 19
3 238.95 temperature 20.0 10 > th dose independent rect. 3 9
5 240.20 temperature 20.0 90 > th dose independent rect. 7 14
17 240.99 temperature 20.0 90 > th dose independent rect. 18 17
20 241.24 radiation 20.0 10 < th dose independent rect. 21 11
21 241.27 wind 9.0 90 < th dose independent rect. 7 14
22 241.36 temperature 20.0 270 > th dose independent rect. 24 10
23 241.37 wind 7.0 90 < th dose independent rect. 21 10
30 241.79 temperature 10.0 90 > th dose independent rect. 21 10
31 241.79 temperature 30.0 90 < th dose independent rect. 21 10
32 241.79 humidity 50.0 90 > th dose independent rect. 21 10
34 241.79 atmosphere 995.0 90 > th dose independent rect. 21 10
35 241.79 radiation 40.0 90 < th dose independent rect. 21 10
37 241.79 atmosphere 1015.0 90 < th dose independent rect. 7 14
44 242.02 wind 9.0 90 < th dose dependent rect. 7 14
55 242.47 temperature 10.0 270 > th dose dependent rect. 24 10
58 242.57 temperature 10.0 10 > th dose dependent rect. 3 9
59 242.60 precipitation 0.1 90 < th dose independent rect. 21 10
60 242.60 precipitation 0.1 90 < th dose dependent rect. 21 10
64 242.95 humidity 50.0 270 > th dose independent rect. 10 5
68 243.26 temperature 30.0 90 < th dose dependent rect. 21 10
71 243.31 radiation 40.0 90 < th dose dependent rect. 21 10
73 243.41 precipitation 0.1 90 < th dose independent rect. 7 14
75 243.41 precipitation 0.1 90 < th dose dependent rect. 7 14
83 243.63 wind 9.0 1440 < th dose independent rect. 22 10
87 243.70 temperature 10.0 270 > th dose dependent rect. 15 19
89 243.76 temperature 10.0 270 > th dose dependent rect. 16 17
107 244.23 radiation 40.0 10 < th dose dependent rect. 21 11
113 244.35 wind 7.0 10 < th dose independent rect. 21 10
133 244.59 temperature 20.0 90 > th dose independent rect. 6 23
142 244.68 atmosphere 995.0 90 > th dose independent rect. 7 14
143 244.72 temperature 10.0 1440 > th dose independent rect. 22 10
146 244.72 temperature 30.0 1440 < th dose independent rect. 22 10
150 244.72 humidity 50.0 1440 > th dose independent rect. 22 10
155 244.72 atmosphere 995.0 1440 > th dose independent rect. 22 10
156 244.72 temperature 10.0 1440 > th dose independent rect. 8 14
163 244.81 wind 1.0 270 > th dose independent rect. 20 10
196 244.94 temperature 10.0 90 > th dose dependent rect. 15 21
199 245.02 radiation 1.0 90 > th dose independent rect. 11 19
202 245.05 radiation 40.0 10 < th dose dependent rect. 21 18
222 245.13 temperature 15.0 90 > th dose dependent rect. 18 17
224 245.15 radiation 20.0 30 < th dose independent rect. 21 17
254 245.47 humidity 50.0 270 > th dose independent rect. 11 3
287 245.79 atmosphere 1015.0 270 < th dose independent rect. 15 19
342 246.38 atmosphere 995.0 270 > th dose dependent rect. 10 5
363 246.51 temperature 10.0 270 > th dose independent rect. 10 5
364 246.51 atmosphere 1015.0 270 < th dose independent rect. 10 5
366 246.51 temperature 10.0 270 > th dose independent rect. 15 19
370 246.53 radiation 1.0 30 > th dose independent rect. 10 21
375 246.59 precipitation 0.1 270 < th dose independent rect. 10 5
377 246.59 precipitation 0.1 270 < th dose dependent rect. 10 5
382 246.62 temperature 20.0 270 < th dose dependent rect. 8 22
384 246.63 temperature 20.0 90 < th dose dependent rect. 24 23
389 246.66 atmosphere 1015.0 270 < th dose independent rect. 23 11
390 246.67 wind 9.0 270 < th dose independent rect. 15 19
393 246.69 atmosphere 995.0 270 > th dose independent rect. 10 5
404 246.74 wind 9.0 10 < th dose independent rect. 3 9
433 246.89 temperature 20.0 270 < th dose dependent rect. 20 23
436 246.92 precipitation 0.1 270 < th dose independent rect. 15 19
438 246.92 precipitation 0.1 270 < th dose dependent rect. 15 19
449 246.96 wind 9.0 270 < th dose independent rect. 10 5
454 246.98 temperature 20.0 270 < th dose dependent no NA NA
458 246.99 temperature 20.0 270 < th dose dependent rect. 15 21
468 247.00 temperature 20.0 270 < th dose dependent rect. 18 23
488 247.05 temperature 20.0 270 < th dose dependent rect. 20 16
519 247.12 humidity 50.0 30 > th dose independent rect. 12 15
525 247.14 temperature 20.0 270 < th dose dependent rect. 11 23
559 247.27 humidity 50.0 270 > th dose independent rect. 23 11
560 247.27 atmosphere 995.0 270 > th dose independent rect. 23 11
562 247.27 temperature 10.0 270 > th dose independent rect. 10 13
575 247.29 wind 9.0 270 < th dose independent rect. 23 11
580 247.31 wind 5.0 720 < th dose independent rect. 3 4
590 247.35 wind 1.0 270 > th dose independent rect. 10 5
593 247.37 radiation 40.0 1440 < th dose independent rect. 22 10
598 247.40 temperature 20.0 270 < th dose dependent sin 9 NA
606 247.42 temperature 20.0 270 < th dose dependent rect. 3 23
607 247.43 temperature 20.0 720 > th dose independent rect. 7 18
610 247.44 radiation 1.0 270 > th dose independent rect. 10 5
625 247.49 atmosphere 995.0 270 > th dose independent rect. 15 19
629 247.51 temperature 10.0 270 > th dose dependent rect. 10 5
631 247.52 humidity 50.0 270 > th dose dependent rect. 11 3
659 247.59 atmosphere 1000.0 10 > th dose independent rect. 12 3
661 247.59 temperature 30.0 30 < th dose dependent rect. 21 18
665 247.62 temperature 20.0 270 > th dose independent rect. 23 22
691 247.70 temperature 20.0 90 > th dose independent sin 7 NA
693 247.70 temperature 30.0 30 < th dose dependent sin 8 NA
700 247.74 precipitation 0.1 270 < th dose independent rect. 24 10
702 247.74 precipitation 0.1 270 < th dose dependent rect. 24 10
703 247.75 wind 1.0 90 > th dose independent rect. 7 14
709 247.78 humidity 50.0 270 > th dose independent rect. 15 19
722 247.82 precipitation 0.1 270 < th dose independent rect. 10 14
724 247.82 precipitation 0.1 270 < th dose dependent rect. 10 14
735 247.85 temperature 20.0 10 > th dose independent rect. 7 5
750 247.89 temperature 10.0 30 > th dose dependent rect. 7 14
760 247.91 humidity 50.0 270 > th dose dependent rect. 10 5
769 247.93 temperature 20.0 720 > th dose independent rect. 14 5
771 247.93 temperature 20.0 90 < th dose dependent sin 6 NA
778 247.96 temperature 20.0 270 < th dose dependent rect. 15 15
782 247.97 wind 9.0 10 < th dose independent rect. 12 15
784 247.97 temperature 30.0 720 < th dose dependent rect. 21 1
793 247.99 wind 1.0 270 > th dose independent rect. 10 14
798 248.00 humidity 50.0 270 > th dose independent rect. 21 18
808 248.02 temperature 10.0 30 > th dose dependent sin 8 NA
827 248.06 humidity 50.0 270 > th dose independent rect. 3 12
828 248.06 atmosphere 1000.0 10 > th dose independent rect. 12 15
835 248.09 temperature 10.0 10 > th dose independent rect. 3 9
837 248.09 atmosphere 995.0 10 > th dose independent rect. 3 9
838 248.09 atmosphere 1015.0 10 < th dose independent rect. 3 9
839 248.09 temperature 10.0 10 > th dose independent rect. 12 15
878 248.18 radiation 30.0 10 < th dose dependent rect. 21 15
882 248.20 temperature 30.0 90 < th dose dependent rect. 23 8
892 248.23 temperature 15.0 720 > th dose independent rect. 22 5
903 248.26 wind 9.0 270 < th dose independent rect. 10 14
915 248.28 radiation 1.0 10 > th dose dependent rect. 15 21
947 248.37 precipitation 0.1 10 < th dose independent rect. 12 15
951 248.37 precipitation 0.1 10 < th dose dependent rect. 12 15
952 248.38 temperature 20.0 270 > th dose independent rect. 15 11
994 248.54 radiation 1.0 10 > th dose dependent rect. 7 5
999 248.57 humidity 70.0 720 > th dose independent rect. 19 3