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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0128300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0403) R2 : 0.151
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.617 (0.104) R2dC : 0.0679 R2C : 0.0801
β3 : 1.18 (0.199) R2dE : 0.0734 R2E : 0.083
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0352 (0.0884) R2dN8 : 0.000248 R2N8 : -0.00345
σ : 0.747
deviance : 256.97
__
_____
C
peak time of C : 16.9
E
wheather : temperature
threshold : 23.4
memory length : 1213
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
252.91 0.747 3.19 0.0343 0.626 1.53 -0.825 1.37 0.0267 17.1 23 1177 -- --
254.76 0.743 3.17 0.207 0.621 1.28 -0.729 -- 0.055 17 23.41 1234 -- --
254.57 0.743 3.19 0.0579 0.621 1.52 -- 1.21 0.0265 17 22.96 1181 -- --
255.96 0.745 3.17 0.212 0.623 1.28 -- -- 0.0638 16.9 23.38 1220 -- --
274.65 0.772 3.18 0.054 -- 1.63 -- 1.29 0.027 -- 23 1184 -- --
274.1 0.776 3.21 -0.148 0.679 -- -0.766 -- -0.155 16.7 -- -- -- --
275.58 0.777 3.21 -0.151 0.673 -- -- -- -0.159 16.6 -- -- -- --
276.22 0.774 3.16 0.216 -- 1.37 -- -- 0.0661 -- 23.52 1201 -- --
256.97 0.747 3.17 -- 0.617 1.18 -- -- 0.0352 16.9 23.4 1213 -- --
299.74 0.809 3.21 -0.177 -- -- -- -- -0.176 -- -- -- -- --
276.19 0.777 3.21 -- 0.676 -- -- -- -0.142 16.6 -- -- -- --
277.26 0.776 3.16 -- -- 1.25 -- -- 0.0303 -- 23.6 1188 -- --
300.57 0.809 3.21 -- -- -- -- -- -0.157 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.54 temperature 20 1440 > th dose independent rect. 3 1
2 244.99 temperature 20 1440 < th dose independent rect. 3 1
3 245.71 temperature 20 1440 > th dose independent rect. 2 3
4 245.79 radiation 1 1440 > th dose dependent rect. 16 2
20 245.94 temperature 20 1440 < th dose independent rect. 2 3
25 246.18 humidity 50 1440 > th dose independent rect. 8 7
29 246.30 humidity 50 1440 > th dose independent rect. 6 9
36 246.42 humidity 50 1440 > th dose independent rect. 23 16
37 246.43 humidity 50 1440 > th dose independent rect. 19 20
43 246.51 humidity 50 1440 > th dose independent rect. 2 13
55 246.78 radiation 40 1440 < th dose dependent rect. 16 8
56 246.79 radiation 40 1440 < th dose dependent rect. 16 2
62 246.87 radiation 40 1440 < th dose dependent rect. 16 5
73 247.07 radiation 40 1440 < th dose dependent rect. 16 10
81 247.20 temperature 30 720 < th dose dependent rect. 3 8
104 247.33 humidity 50 720 > th dose independent sin 7 NA
111 247.50 temperature 25 720 < th dose dependent rect. 5 6
112 247.52 radiation 20 1440 < th dose independent rect. 16 1
114 247.59 temperature 10 1440 > th dose dependent rect. 2 1
133 247.81 temperature 30 1440 < th dose dependent rect. 2 2
144 247.92 temperature 25 720 < th dose dependent rect. 6 1
159 248.09 humidity 50 4320 < th dose independent rect. 9 6
180 248.14 radiation 20 1440 < th dose independent rect. 16 8
184 248.17 temperature 20 1440 > th dose independent rect. 5 1
186 248.18 radiation 20 1440 < th dose independent rect. 16 4
198 248.31 radiation 40 4320 < th dose independent rect. 23 9
202 248.34 radiation 20 1440 < th dose independent rect. 16 10
204 248.40 radiation 20 1440 < th dose independent rect. 16 14
226 248.61 humidity 50 4320 < th dose independent rect. 14 1
298 249.26 radiation 40 4320 < th dose independent rect. 21 11
302 249.31 temperature 30 720 < th dose dependent sin 5 NA
314 249.37 humidity 50 1440 > th dose independent rect. 13 2
316 249.37 humidity 50 720 < th dose independent rect. 9 6
336 249.39 radiation 40 4320 < th dose independent rect. 7 1
349 249.44 radiation 40 4320 < th dose independent rect. 19 13
419 249.74 radiation 40 4320 < th dose independent rect. 17 15
464 249.98 temperature 25 30 > th dose dependent rect. 23 1
468 250.00 radiation 30 43200 > th dose independent rect. 16 16
473 250.01 wind 3 43200 < th dose dependent rect. 22 1
507 250.16 radiation 30 43200 > th dose independent rect. 7 1
523 250.17 temperature 15 1440 > th dose dependent rect. 5 1
524 250.17 temperature 15 720 > th dose dependent rect. 4 8
552 250.34 radiation 40 4320 < th dose independent rect. 2 6
556 250.36 temperature 15 720 > th dose dependent rect. 2 10
562 250.44 humidity 60 43200 < th dose independent rect. 8 1
570 250.48 humidity 60 43200 > th dose independent rect. 8 1
600 250.55 temperature 15 720 > th dose dependent rect. 2 8
697 250.94 wind 9 43200 > th dose independent rect. 10 4
753 251.11 wind 9 43200 > th dose independent rect. 10 7
764 251.15 temperature 20 1440 > th dose independent sin 8 NA
798 251.35 temperature 20 1440 < th dose independent sin 8 NA
823 251.44 wind 1 14400 < th dose dependent rect. 22 5
828 251.46 radiation 1 14400 < th dose independent rect. 14 2
831 251.48 radiation 1 14400 > th dose independent rect. 14 2
841 251.51 temperature 10 720 > th dose dependent sin 5 NA
862 251.58 humidity 50 720 < th dose independent sin 7 NA
872 251.62 radiation 30 43200 < th dose independent rect. 15 16
900 251.69 humidity 50 4320 < th dose independent sin 7 NA
904 251.70 radiation 30 43200 < th dose independent rect. 15 8
908 251.71 radiation 30 43200 < th dose independent rect. 15 2
930 251.74 radiation 20 43200 > th dose dependent rect. 15 17
931 251.75 radiation 10 1440 > th dose independent rect. 16 1
932 251.75 wind 1 43200 < th dose dependent rect. 20 3
935 251.76 wind 9 43200 < th dose independent rect. 10 4
962 251.87 radiation 10 43200 > th dose dependent rect. 16 15
981 251.93 humidity 80 43200 < th dose independent rect. 17 1
987 251.95 wind 1 14400 < th dose independent rect. 22 1
994 251.97 temperature 25 720 < th dose independent rect. 9 2