Os01g0127200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os01g0127200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 305.41 | 0.821 | 2.94 | -0.764 | 0.246 | -28.4 | 1.01 | -84 | -0.182 | 12.9 | 1.032 | 295 | 4.07 | 1.05 |
| 1259.94 | 1.65 | 3.21 | -0.657 | 0.039 | -25.6 | 0.592 | -- | -0.466 | 13.8 | 3.18 | 69 | 4.13 | 1 |
| 307.51 | 0.817 | 2.94 | -0.756 | 0.278 | -28.2 | -- | -82.7 | -0.207 | 10.7 | 0.8167 | 260 | 4.08 | 1.07 |
| 374.54 | 0.907 | 3.21 | -0.28 | 0.323 | -0.49 | -- | -- | -0.245 | 9.88 | 0.8167 | 260 | 4.08 | 1.07 |
| 312 | 0.823 | 2.95 | -0.744 | -- | -28 | -- | -82.6 | -0.192 | -- | 0.9503 | 258 | 4.08 | 1.07 |
| 369.29 | 0.901 | 3.22 | -0.298 | 0.0567 | -- | -2.12 | -- | -0.255 | 4.73 | -- | -- | -- | -- |
| 375.01 | 0.907 | 3.2 | -0.283 | 0.32 | -- | -- | -- | -0.243 | 9.98 | -- | -- | -- | -- |
| 373.3 | 0.9 | 3.2 | -0.498 | -- | 0.734 | -- | -- | -0.251 | -- | 0.1216 | 200 | 3.74 | 1.21 |
| 344.95 | 0.865 | 3.24 | -- | 0.00278 | 2.02 | -- | -- | -0.261 | 11.3 | 9.844 | 139 | 5.7 | 0.0841 |
| 381.18 | 0.912 | 3.21 | -0.287 | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
| 377.12 | 0.908 | 3.2 | -- | 0.321 | -- | -- | -- | -0.211 | 10 | -- | -- | -- | -- |
| 315.84 | 0.828 | 3.2 | -- | -- | 5.53 | -- | -- | -0.222 | -- | 5.712 | 139 | 5.68 | 0.0157 |
| 383.34 | 0.914 | 3.21 | -- | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 307.69 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 1 |
| 11 | 307.69 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 21 | 311.78 | humidity | 90 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 22 | 316.61 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 28 | 326.11 | humidity | 80 | 270 | < th | dose independent | rect. | 4 | 2 |
| 45 | 326.54 | humidity | 90 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 49 | 327.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 109 | 335.57 | humidity | 90 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 112 | 336.04 | humidity | 90 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 132 | 337.02 | humidity | 70 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 134 | 337.26 | humidity | 70 | 10 | < th | dose independent | rect. | 19 | 13 |
| 137 | 337.52 | humidity | 70 | 90 | < th | dose independent | rect. | 18 | 14 |
| 156 | 338.18 | humidity | 70 | 90 | < th | dose dependent | rect. | 18 | 14 |
| 165 | 338.54 | radiation | 40 | 10 | < th | dose independent | sin | 13 | NA |
| 181 | 338.86 | humidity | 70 | 10 | < th | dose dependent | rect. | 17 | 15 |
| 205 | 339.15 | humidity | 80 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 208 | 339.21 | radiation | 30 | 30 | > th | dose dependent | rect. | 7 | 2 |
| 289 | 339.34 | radiation | 30 | 30 | > th | dose independent | rect. | 7 | 1 |
| 393 | 339.65 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 439 | 339.68 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 571 | 339.82 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 1 |
| 614 | 340.01 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 3 |
| 690 | 340.45 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 3 |
| 722 | 340.74 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 742 | 341.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 747 | 341.36 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 1 |
| 802 | 341.90 | wind | 7 | 10 | > th | dose independent | rect. | 11 | 4 |
| 803 | 341.90 | wind | 3 | 720 | > th | dose independent | rect. | 1 | 5 |
| 809 | 341.94 | humidity | 80 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 902 | 342.82 | radiation | 1 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 990 | 343.58 | wind | 3 | 720 | > th | dose dependent | rect. | 2 | 4 |