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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0127100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0149) R2 : 0.0016
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0268 (0.0313) R2dN8 : 0.00207 R2N8 : 0.0016
σ : 0.28
deviance : 36.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.56 0.272 3.12 0.148 0.124 -0.205 -0.0491 -0.792 6.18e-05 7.01 50.19 5914 -- --
34.2 0.272 3.12 0.114 0.119 -0.228 -0.0202 -- -0.0427 7.61 79 6983 -- --
33.57 0.27 3.12 0.148 0.124 -0.204 -- -0.792 -0.00018 7.12 50.85 5914 -- --
34.2 0.272 3.12 0.104 0.124 -0.235 -- -- -0.0503 7.53 79.08 6983 -- --
34.36 0.273 3.12 0.149 -- -0.207 -- -0.786 0.00103 -- 50.98 5839 -- --
35.12 0.278 3.1 0.0635 0.122 -- -0.0672 -- 0.0315 6.93 -- -- -- --
35.13 0.278 3.1 0.0625 0.122 -- -- -- 0.0318 7.12 -- -- -- --
35 0.276 3.12 0.103 -- -0.23 -- -- -0.0479 -- 79 7019 -- --
34.46 0.273 3.12 -- 0.122 -0.209 -- -- -0.0546 7.44 77.35 6983 -- --
35.91 0.28 3.1 0.0648 -- -- -- -- 0.034 -- -- -- -- --
35.23 0.278 3.1 -- 0.122 -- -- -- 0.0249 7.08 -- -- -- --
35.27 0.277 3.12 -- -- -0.204 -- -- -0.0511 -- 76.43 7028 -- --
36.02 0.28 3.1 -- -- -- -- -- 0.0268 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.86 atmosphere 1010.0 30 < th dose dependent rect. 2 1
3 29.03 wind 1.0 30 < th dose independent rect. 2 1
5 29.05 wind 3.0 10 < th dose dependent rect. 2 1
15 29.08 temperature 10.0 30 > th dose independent rect. 2 1
17 29.08 temperature 25.0 30 < th dose independent rect. 2 1
19 29.08 humidity 50.0 30 > th dose independent rect. 2 1
22 29.08 atmosphere 995.0 30 > th dose independent rect. 2 1
23 29.08 atmosphere 1010.0 30 < th dose independent rect. 2 1
25 29.08 radiation 1.0 30 < th dose independent rect. 2 1
30 29.08 precipitation 0.1 30 < th dose independent rect. 2 1
31 29.08 temperature 10.0 30 > th dose independent rect. 3 23
33 29.08 humidity 50.0 30 > th dose dependent rect. 2 1
34 29.08 radiation 1.0 30 < th dose dependent rect. 2 1
39 29.08 precipitation 0.1 30 < th dose dependent rect. 2 1
42 29.09 wind 9.0 30 < th dose independent rect. 3 23
44 29.09 temperature 15.0 10 > th dose dependent rect. 2 1
47 29.09 temperature 30.0 30 < th dose dependent rect. 2 1
60 29.14 atmosphere 1005.0 30 > th dose dependent rect. 2 1
89 29.17 atmosphere 995.0 30 > th dose dependent rect. 2 1
93 29.22 atmosphere 1005.0 30 > th dose independent rect. 2 1
99 29.26 wind 1.0 30 > th dose independent rect. 2 1
106 29.49 atmosphere 995.0 30 > th dose independent rect. 3 23
118 30.46 precipitation 0.1 30 < th dose independent rect. 3 23
119 30.46 precipitation 0.1 30 < th dose dependent rect. 3 23
134 31.11 radiation 1.0 43200 < th dose dependent rect. 3 1
143 31.22 wind 9.0 1440 < th dose independent rect. 3 1
144 31.22 temperature 10.0 1440 > th dose independent rect. 3 1
147 31.22 temperature 30.0 1440 < th dose independent rect. 3 1
151 31.22 humidity 50.0 1440 > th dose independent rect. 3 1
160 31.22 atmosphere 995.0 1440 > th dose independent rect. 3 1
161 31.22 radiation 1.0 1440 < th dose independent rect. 3 1
181 31.22 temperature 10.0 1440 > th dose independent rect. 4 23
185 31.22 radiation 1.0 1440 < th dose dependent rect. 3 1
207 31.37 humidity 50.0 30 > th dose independent rect. 3 23
213 31.46 humidity 90.0 90 < th dose independent rect. 2 1
307 32.28 atmosphere 1015.0 30 < th dose independent rect. 3 23
318 32.36 atmosphere 995.0 720 > th dose independent rect. 23 16
323 32.42 wind 9.0 30 < th dose dependent rect. 3 23
325 32.44 wind 1.0 30 > th dose dependent rect. 2 1
347 32.58 atmosphere 995.0 30 > th dose dependent rect. 3 23
366 32.74 wind 1.0 30 < th dose independent rect. 21 6
373 32.75 radiation 20.0 30 < th dose dependent rect. 3 23
378 32.76 radiation 40.0 30 < th dose dependent rect. 3 23
421 32.84 atmosphere 1015.0 1440 < th dose independent rect. 3 1
422 32.84 temperature 10.0 720 > th dose independent rect. 15 8
423 32.84 temperature 10.0 720 > th dose independent rect. 23 16
424 32.84 temperature 30.0 30 < th dose independent rect. 3 23
430 32.87 precipitation 0.1 720 < th dose independent rect. 15 8
432 32.87 precipitation 0.1 720 < th dose dependent rect. 15 8
433 32.88 wind 1.0 10 < th dose independent rect. 14 13
460 32.93 temperature 10.0 720 > th dose independent rect. 3 8
461 32.93 atmosphere 995.0 720 > th dose independent rect. 3 8
462 32.93 temperature 10.0 720 > th dose independent rect. 11 16
467 32.94 atmosphere 1000.0 10 > th dose independent rect. 16 10
472 32.97 humidity 90.0 10 > th dose independent rect. 24 3
478 32.99 humidity 50.0 30 > th dose dependent rect. 3 23
504 33.02 wind 9.0 720 < th dose independent rect. 3 8
507 33.02 radiation 10.0 30 < th dose independent rect. 3 23
511 33.04 precipitation 0.1 720 < th dose independent rect. 11 16
515 33.04 precipitation 0.1 720 < th dose dependent rect. 11 16
520 33.07 wind 1.0 10 < th dose independent rect. 6 21
525 33.08 radiation 40.0 720 < th dose independent rect. 15 8
544 33.13 humidity 50.0 720 > th dose independent rect. 3 8
597 33.27 wind 3.0 30 < th dose dependent rect. 22 5
609 33.30 atmosphere 1015.0 720 < th dose independent rect. 3 8
612 33.30 radiation 40.0 10 < th dose dependent rect. 14 12
627 33.32 radiation 40.0 30 < th dose independent rect. 3 23
629 33.32 humidity 80.0 14400 < th dose dependent rect. 2 7
630 33.33 atmosphere 995.0 720 > th dose independent rect. 7 8
632 33.33 humidity 90.0 90 < th dose dependent rect. 2 1
635 33.33 humidity 80.0 14400 < th dose dependent rect. 21 13
647 33.35 wind 9.0 720 < th dose independent rect. 15 8
666 33.36 wind 1.0 90 > th dose independent rect. 3 23
679 33.38 humidity 50.0 10 > th dose independent rect. 16 10
681 33.38 radiation 30.0 10 < th dose independent rect. 16 10
682 33.38 precipitation 0.1 10 < th dose independent rect. 2 14
687 33.38 precipitation 0.1 10 < th dose dependent rect. 2 14
694 33.39 radiation 10.0 10 < th dose independent rect. 14 12
704 33.40 wind 9.0 10 < th dose independent rect. 16 10
705 33.40 temperature 10.0 10 > th dose independent rect. 16 10
708 33.40 temperature 10.0 10 > th dose independent rect. 2 14
710 33.40 atmosphere 1015.0 10 < th dose independent rect. 2 14
735 33.42 precipitation 0.1 10 < th dose independent rect. 16 10
742 33.42 precipitation 0.1 10 < th dose dependent rect. 16 10
746 33.43 wind 9.0 10 < th dose independent rect. 2 14
753 33.44 humidity 50.0 10 > th dose independent rect. 2 14
817 33.45 wind 3.0 30 < th dose dependent rect. 13 14
865 33.46 atmosphere 995.0 10 > th dose independent rect. 2 14
884 33.47 humidity 70.0 14400 > th dose independent rect. 7 3
905 33.48 atmosphere 995.0 720 > th dose independent rect. 15 8
908 33.48 temperature 10.0 1440 > th dose independent rect. 17 10
911 33.48 temperature 30.0 10 < th dose independent rect. 16 10
915 33.48 radiation 30.0 1440 < th dose independent rect. 17 10
923 33.48 temperature 10.0 1440 > th dose independent rect. 3 14
938 33.49 humidity 70.0 14400 < th dose independent rect. 8 2
950 33.50 humidity 70.0 14400 < th dose independent rect. 6 4
957 33.50 atmosphere 1000.0 90 > th dose independent rect. 3 9