Os01g0126200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0126200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.4 | 0.386 | 12.6 | 0.446 | 1.47 | -1.1 | 0.432 | 0.337 | 0.184 | 11.7 | 21 | 2629 | -- | -- |
| 67.52 | 0.383 | 12.7 | 0.378 | 1.47 | -1.09 | 0.395 | -- | 0.158 | 11.7 | 20.98 | 2638 | -- | -- |
| 68.19 | 0.385 | 12.6 | 0.419 | 1.46 | -1.1 | -- | 0.197 | 0.174 | 11.7 | 21.03 | 2619 | -- | -- |
| 68.21 | 0.385 | 12.6 | 0.365 | 1.46 | -1.09 | -- | -- | 0.16 | 11.7 | 20.88 | 2623 | -- | -- |
| 190.02 | 0.642 | 12.6 | 0.777 | -- | -1.62 | -- | 1.47 | 0.154 | -- | 23.8 | 2438 | -- | -- |
| 104.29 | 0.479 | 12.7 | -0.0828 | 1.6 | -- | 0.527 | -- | -0.0881 | 11.9 | -- | -- | -- | -- |
| 105.49 | 0.481 | 12.7 | -0.062 | 1.6 | -- | -- | -- | -0.086 | 11.8 | -- | -- | -- | -- |
| 191.37 | 0.644 | 12.7 | 0.396 | -- | -1.49 | -- | -- | 0.146 | -- | 23.5 | 2430 | -- | -- |
| 71.01 | 0.392 | 12.7 | -- | 1.46 | -0.962 | -- | -- | 0.0845 | 11.7 | 22 | 2617 | -- | -- |
| 267.06 | 0.764 | 12.7 | -0.11 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 105.59 | 0.481 | 12.7 | -- | 1.6 | -- | -- | -- | -0.0791 | 11.9 | -- | -- | -- | -- |
| 179.42 | 0.624 | 12.7 | -- | -- | -1.63 | -- | -- | 0.0915 | -- | 23.7 | 989 | -- | -- |
| 267.37 | 0.763 | 12.7 | -- | -- | -- | -- | -- | -0.0946 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 12 | 61.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 17 | 62.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 22 | 62.36 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 31 | 62.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 34 | 62.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 89 | 64.62 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 126 | 65.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 7 |
| 135 | 65.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 15 |
| 139 | 65.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 170 | 66.49 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 180 | 66.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 181 | 66.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 192 | 66.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 242 | 67.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 246 | 67.44 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 20 |
| 253 | 67.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 260 | 67.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 266 | 67.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 20 |
| 292 | 68.12 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 297 | 68.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 305 | 68.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 316 | 68.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 324 | 68.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 325 | 68.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 344 | 68.49 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 360 | 68.53 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 397 | 68.63 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 417 | 68.67 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 442 | 68.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 443 | 68.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 473 | 68.75 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 477 | 68.76 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 521 | 68.83 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 615 | 68.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 664 | 68.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 667 | 69.00 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 675 | 69.00 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 733 | 69.06 | radiation | 1 | 14400 | > th | dose independent | sin | 2 | NA |
| 750 | 69.09 | radiation | 1 | 14400 | < th | dose independent | sin | 2 | NA |
| 780 | 69.15 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 800 | 69.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 824 | 69.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 844 | 69.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 845 | 69.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 979 | 69.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 980 | 69.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 997 | 69.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 4 |