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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0126000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0136) R2 : 0.00276
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0321 (0.0286) R2dN8 : 0.00356 R2N8 : 0.00276
σ : 0.256
deviance : 30.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.42 0.25 3.05 0.248 0.125 -0.106 0.169 1.99 0.0795 7.5 26.37 317 -- --
29.03 0.251 3.07 0.0491 0.133 0.142 0.0181 -- 0.0448 7.44 29.87 144 -- --
28.46 0.248 3.05 0.244 0.121 -0.136 -- 2.11 0.0733 7.58 27.1 342 -- --
29.01 0.251 3.07 0.043 0.138 0.155 -- -- 0.0436 6.95 30.1 151 -- --
29.04 0.251 3.04 0.317 -- -0.307 -- 2.88 0.0871 -- 27.5 374 -- --
29.28 0.254 3.07 0.055 0.115 -- -0.0258 -- 0.0364 7.27 -- -- -- --
29.28 0.253 3.07 0.0545 0.115 -- -- -- 0.0365 7.36 -- -- -- --
29.87 0.255 3.07 0.0742 -- -0.0671 -- -- 0.0509 -- 20.4 678 -- --
29.06 0.251 3.07 -- 0.141 0.159 -- -- 0.0392 6.9 29.9 158 -- --
29.99 0.256 3.07 0.0564 -- -- -- -- 0.0384 -- -- -- -- --
29.36 0.253 3.07 -- 0.116 -- -- -- 0.0304 7.33 -- -- -- --
29.95 0.256 3.07 -- -- 0.109 -- -- 0.0368 -- 29.9 158 -- --
30.07 0.256 3.08 -- -- -- -- -- 0.0321 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.52 humidity 90.0 10 < th dose independent rect. 2 3
3 27.60 atmosphere 1005.0 10 > th dose dependent rect. 2 3
5 27.71 temperature 25.0 270 > th dose independent rect. 1 1
6 27.76 atmosphere 1010.0 30 < th dose dependent rect. 2 1
7 27.80 radiation 1.0 10 > th dose dependent rect. 18 1
19 27.82 wind 1.0 30 < th dose independent rect. 2 1
25 27.85 atmosphere 995.0 30 > th dose independent rect. 3 23
26 27.86 wind 3.0 30 < th dose dependent rect. 2 1
32 27.88 wind 9.0 30 < th dose independent rect. 2 1
33 27.88 temperature 10.0 30 > th dose independent rect. 2 1
35 27.88 temperature 25.0 30 < th dose independent rect. 2 1
37 27.88 humidity 50.0 30 > th dose independent rect. 2 1
41 27.88 atmosphere 995.0 30 > th dose independent rect. 2 1
42 27.88 atmosphere 1010.0 30 < th dose independent rect. 2 1
44 27.88 radiation 1.0 30 < th dose independent rect. 2 1
49 27.88 precipitation 0.1 30 < th dose independent rect. 2 1
50 27.88 temperature 10.0 30 > th dose independent rect. 3 23
53 27.88 temperature 10.0 30 > th dose dependent rect. 2 1
55 27.88 humidity 50.0 30 > th dose dependent rect. 2 1
56 27.88 humidity 90.0 10 < th dose dependent rect. 4 1
58 27.88 radiation 1.0 30 < th dose dependent rect. 2 1
63 27.88 precipitation 0.1 30 < th dose dependent rect. 2 1
73 27.90 atmosphere 1005.0 30 > th dose dependent rect. 2 1
75 27.91 temperature 25.0 90 > th dose independent rect. 1 4
76 27.91 wind 9.0 30 < th dose independent rect. 3 23
81 27.92 temperature 30.0 30 < th dose dependent rect. 2 1
84 27.94 atmosphere 995.0 30 > th dose dependent rect. 2 1
90 27.96 atmosphere 1005.0 30 > th dose independent rect. 2 1
134 28.03 atmosphere 1000.0 10 > th dose independent rect. 5 21
138 28.05 wind 1.0 30 > th dose independent rect. 2 1
140 28.06 atmosphere 1000.0 720 > th dose independent rect. 21 14
142 28.07 temperature 25.0 720 > th dose dependent rect. 5 3
149 28.11 temperature 25.0 270 > th dose dependent rect. 1 1
151 28.11 humidity 60.0 10 < th dose dependent rect. 18 16
153 28.12 humidity 60.0 10 < th dose dependent rect. 18 1
170 28.13 temperature 25.0 720 > th dose dependent rect. 24 9
177 28.16 atmosphere 1000.0 720 > th dose independent rect. 23 10
179 28.16 temperature 25.0 90 > th dose dependent rect. 2 3
185 28.18 humidity 90.0 270 < th dose independent rect. 1 1
187 28.18 atmosphere 1000.0 10 > th dose independent rect. 16 10
188 28.18 atmosphere 1000.0 10 > th dose independent rect. 8 18
192 28.19 radiation 30.0 270 > th dose independent rect. 14 19
195 28.19 temperature 25.0 90 > th dose dependent rect. 15 19
196 28.20 atmosphere 1000.0 270 > th dose independent rect. 14 11
197 28.20 atmosphere 1000.0 10 < th dose independent rect. 7 20
199 28.20 atmosphere 1000.0 10 > th dose independent rect. 19 23
217 28.23 atmosphere 1000.0 30 > th dose independent rect. 1 23
223 28.25 atmosphere 1000.0 720 > th dose independent rect. 5 6
229 28.26 temperature 30.0 10 < th dose independent rect. 16 10
230 28.26 atmosphere 995.0 720 > th dose independent rect. 23 16
232 28.26 atmosphere 1000.0 10 > th dose independent rect. 23 23
236 28.27 humidity 60.0 10 > th dose independent rect. 16 10
237 28.27 temperature 30.0 720 < th dose independent rect. 9 12
238 28.27 atmosphere 1000.0 90 > th dose independent rect. 9 23
243 28.29 atmosphere 1000.0 90 < th dose dependent rect. 7 19
254 28.31 atmosphere 1000.0 10 > th dose independent rect. 8 12
255 28.31 temperature 30.0 720 < th dose independent rect. 9 14
257 28.31 temperature 30.0 720 < th dose independent rect. 17 21
265 28.31 radiation 10.0 270 > th dose dependent rect. 14 19
268 28.32 radiation 30.0 720 > th dose independent sin 12 NA
271 28.32 temperature 30.0 720 < th dose independent rect. 9 6
273 28.32 temperature 30.0 270 < th dose independent rect. 1 13
279 28.32 atmosphere 1000.0 270 > th dose independent rect. 9 20
285 28.32 atmosphere 1000.0 10 < th dose dependent rect. 14 5
297 28.33 atmosphere 1000.0 10 > th dose independent rect. 10 16
307 28.33 temperature 30.0 10 < th dose dependent rect. 4 1
318 28.33 humidity 80.0 14400 < th dose dependent rect. 24 9
326 28.34 temperature 30.0 720 < th dose independent rect. 11 10
333 28.34 atmosphere 1000.0 10 > th dose independent rect. 8 23
351 28.35 atmosphere 1000.0 30 > th dose independent rect. 14 12
361 28.35 precipitation 0.1 10 < th dose independent rect. 3 23
367 28.35 atmosphere 1005.0 10 > th dose dependent rect. 2 6
378 28.35 precipitation 0.1 10 < th dose dependent rect. 3 23
379 28.36 temperature 25.0 30 < th dose independent rect. 4 1
392 28.36 temperature 30.0 720 < th dose independent rect. 2 21
395 28.36 atmosphere 1000.0 90 > th dose independent rect. 17 23
397 28.36 temperature 25.0 30 > th dose dependent sin 11 NA
410 28.37 atmosphere 1000.0 720 > th dose independent rect. 11 2
411 28.37 humidity 90.0 1440 < th dose independent rect. 1 3
423 28.37 atmosphere 1000.0 10 > th dose independent rect. 14 23
424 28.37 atmosphere 1000.0 90 > th dose independent rect. 14 23
444 28.38 atmosphere 1000.0 10 > th dose independent rect. 19 21
456 28.38 atmosphere 1000.0 90 < th dose dependent rect. 6 12
466 28.38 atmosphere 995.0 10 > th dose dependent rect. 5 21
469 28.39 temperature 25.0 30 > th dose independent rect. 4 1
480 28.39 atmosphere 1000.0 270 > th dose independent rect. 10 12
481 28.39 atmosphere 1000.0 270 > th dose independent rect. 1 13
483 28.39 atmosphere 1000.0 90 > th dose independent rect. 11 18
487 28.39 wind 5.0 14400 < th dose dependent rect. 11 1
491 28.39 humidity 80.0 90 < th dose dependent rect. 24 3
492 28.39 atmosphere 1000.0 10 < th dose dependent rect. 14 8
494 28.39 atmosphere 995.0 10 > th dose dependent rect. 16 10
497 28.39 atmosphere 1000.0 90 < th dose dependent rect. 14 12
513 28.40 temperature 25.0 720 > th dose independent rect. 5 4
517 28.40 atmosphere 1000.0 90 > th dose independent rect. 11 14
524 28.40 wind 1.0 14400 > th dose dependent rect. 11 1
554 28.41 wind 3.0 10 < th dose independent rect. 4 1
556 28.41 radiation 40.0 720 > th dose independent rect. 9 1
557 28.41 radiation 1.0 10 > th dose independent rect. 18 1
566 28.41 atmosphere 995.0 720 > th dose independent rect. 11 10
568 28.41 wind 1.0 270 > th dose independent rect. 14 11
576 28.41 temperature 30.0 270 < th dose independent rect. 9 20
585 28.41 radiation 10.0 720 > th dose dependent sin 12 NA
586 28.41 temperature 25.0 90 > th dose dependent rect. 4 1
587 28.41 temperature 30.0 10 > th dose dependent rect. 18 1
592 28.41 wind 3.0 14400 > th dose dependent rect. 10 5
617 28.42 atmosphere 1000.0 10 > th dose independent sin 18 NA
623 28.42 atmosphere 1005.0 30 > th dose independent rect. 2 3
626 28.42 humidity 50.0 10 > th dose independent rect. 2 14
627 28.42 atmosphere 995.0 720 > th dose independent rect. 9 14
630 28.42 atmosphere 1000.0 90 > th dose independent rect. 11 20
640 28.42 atmosphere 1010.0 720 < th dose dependent rect. 7 1
657 28.43 precipitation 0.1 10 < th dose independent rect. 4 1
677 28.43 temperature 30.0 270 < th dose independent rect. 8 23
678 28.43 atmosphere 1000.0 10 > th dose independent rect. 21 23
681 28.43 wind 1.0 30 > th dose dependent rect. 4 1
682 28.43 wind 5.0 10 < th dose dependent rect. 4 1
686 28.43 precipitation 0.1 10 < th dose dependent rect. 4 1
707 28.44 atmosphere 1005.0 10 > th dose independent rect. 4 1
708 28.44 atmosphere 1000.0 720 > th dose independent rect. 8 1
721 28.44 atmosphere 1000.0 10 < th dose independent rect. 24 19
725 28.44 atmosphere 1000.0 30 > th dose independent rect. 23 21
741 28.44 atmosphere 995.0 30 > th dose dependent rect. 8 12
744 28.44 atmosphere 1000.0 90 < th dose dependent rect. 6 15
757 28.45 wind 3.0 14400 > th dose independent rect. 10 2
758 28.45 temperature 30.0 720 < th dose independent rect. 11 2
761 28.45 wind 5.0 14400 < th dose independent rect. 10 7
763 28.45 atmosphere 1000.0 270 > th dose independent rect. 5 13
764 28.45 wind 1.0 30 > th dose independent rect. 2 14
765 28.45 atmosphere 1000.0 10 < th dose independent rect. 1 17
782 28.45 temperature 25.0 270 > th dose dependent rect. 14 1
783 28.45 radiation 1.0 10 < th dose dependent rect. 4 1
786 28.45 wind 7.0 14400 < th dose dependent rect. 10 5
796 28.45 atmosphere 995.0 30 > th dose dependent rect. 14 12
811 28.45 atmosphere 1000.0 90 < th dose dependent rect. 13 21
819 28.46 temperature 10.0 10 > th dose independent rect. 4 1
822 28.46 humidity 50.0 10 > th dose independent rect. 4 1
827 28.46 atmosphere 995.0 10 > th dose independent rect. 4 1
829 28.46 atmosphere 1010.0 10 < th dose independent rect. 4 1
831 28.46 radiation 1.0 10 < th dose independent rect. 4 1
839 28.46 wind 5.0 14400 < th dose independent rect. 11 4
854 28.46 atmosphere 1000.0 30 < th dose independent rect. 7 11
886 28.46 temperature 10.0 10 > th dose independent rect. 5 23
888 28.46 atmosphere 1000.0 10 < th dose independent rect. 12 23
891 28.46 atmosphere 1000.0 90 < th dose dependent sin 20 NA
912 28.46 atmosphere 1015.0 30 < th dose dependent rect. 7 11
925 28.46 atmosphere 995.0 30 > th dose dependent rect. 8 18
941 28.46 atmosphere 995.0 30 > th dose dependent rect. 3 23
949 28.47 atmosphere 1000.0 10 < th dose independent rect. 14 5
951 28.47 wind 5.0 14400 > th dose independent rect. 10 7
954 28.47 wind 1.0 30 > th dose independent rect. 16 10
963 28.47 precipitation 0.1 10 < th dose independent rect. 2 14
972 28.47 radiation 40.0 270 < th dose independent rect. 9 20
985 28.47 temperature 30.0 720 < th dose independent rect. 15 23
990 28.47 wind 1.0 14400 < th dose dependent rect. 2 1
992 28.47 temperature 25.0 4320 > th dose dependent rect. 6 1
993 28.47 atmosphere 995.0 720 > th dose dependent rect. 8 1