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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0124700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0418) R2 : 0.108
β1 : 0.103 (0.153) R2dD : 0.000916 R2D : 0.00171
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.8 (0.275) R2dE : 0.103 R2E : 0.0282
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.28 (1.09) R2dD*E : 0.0788 R2D*E : 0.00241
γ1 : -0.00641 (0.0894) R2dN8 : 1.32e-05 R2N8 : -0.000181
σ : 0.781
deviance : 281.16
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 79
memory length : 12
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23.3
open length of G : 9.51

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.45 0.787 3 0.0991 0.0316 1.79 -0.512 -6.08 -0.00997 4.71 80 12 22.6 9.37
299.02 0.805 3 0.107 0.00255 1.2 0.835 -- -0.057 16.3 79.33 24 23.7 8.7
281.09 0.781 2.99 0.106 0.0402 1.77 -- -6.17 -0.00134 5.43 79.21 12 23.3 9.48
301.05 0.808 2.99 0.0516 0.0505 1.18 -- -- -0.0429 11.8 79 24 23.7 8.86
281.16 0.781 3 0.103 -- 1.8 -- -6.28 -0.00641 -- 79 12 23.3 9.51
311.15 0.827 2.99 0.162 0.152 -- -0.859 -- -0.0583 6.22 -- -- -- --
312.76 0.828 2.99 0.154 0.157 -- -- -- -0.0544 7.63 -- -- -- --
301.11 0.808 2.99 0.127 -- 1.15 -- -- -0.0253 -- 79.36 24 23.7 8.84
301.16 0.808 2.99 -- 0.0744 1.14 -- -- -0.0412 8.82 79.38 24 23.7 8.74
314.09 0.828 2.99 0.156 -- -- -- -- -0.052 -- -- -- -- --
313.39 0.828 2.99 -- 0.159 -- -- -- -0.0716 7.56 -- -- -- --
301.49 0.809 2.99 -- -- 1.15 -- -- -0.0418 -- 79.4 24 23.7 8.82
314.74 0.828 2.99 -- -- -- -- -- -0.0694 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 280.91 humidity 80 10 < th dose independent rect. 23 9
2 281.52 humidity 80 10 < th dose independent rect. 7 1
21 286.67 radiation 10 30 > th dose independent rect. 7 1
23 289.37 wind 9 10 > th dose independent rect. 13 1
35 289.37 wind 9 10 > th dose dependent rect. 13 1
72 289.94 humidity 50 10 < th dose dependent rect. 13 3
74 290.34 humidity 50 10 < th dose independent rect. 13 3
92 292.26 humidity 50 90 < th dose independent rect. 11 3
110 292.28 humidity 50 90 < th dose dependent rect. 11 3
129 292.33 humidity 50 90 < th dose independent rect. 12 1
176 292.40 humidity 90 10 < th dose dependent rect. 7 1
481 296.03 humidity 80 10 < th dose dependent rect. 21 11
487 296.43 humidity 90 90 < th dose dependent rect. 4 4
488 296.47 atmosphere 1005 30 > th dose independent rect. 7 1
490 296.51 humidity 50 90 < th dose dependent sin 7 NA
523 296.96 wind 5 90 > th dose independent rect. 2 2
526 297.00 wind 5 90 > th dose dependent rect. 2 2
529 297.06 wind 3 10 > th dose independent rect. 4 1
531 297.06 wind 3 10 > th dose dependent rect. 4 1
624 297.79 radiation 40 90 > th dose independent rect. 12 23
636 297.95 humidity 70 10 < th dose independent rect. 16 17
641 297.99 radiation 10 30 < th dose independent rect. 13 3
649 298.04 radiation 10 10 > th dose dependent rect. 16 16
657 298.24 radiation 1 30 > th dose dependent rect. 7 1
658 298.25 temperature 25 30 > th dose independent rect. 7 1
659 298.25 radiation 30 10 > th dose dependent rect. 8 1
664 298.29 humidity 70 10 < th dose dependent rect. 16 16
666 298.31 humidity 50 10 < th dose dependent sin 12 NA
721 298.51 radiation 10 10 < th dose independent rect. 14 1
737 298.63 humidity 70 90 < th dose independent rect. 17 15
750 298.84 humidity 50 10 < th dose independent sin 13 NA
785 299.11 atmosphere 1005 30 > th dose dependent rect. 7 1
812 299.31 wind 7 90 > th dose independent rect. 2 7
855 299.40 radiation 30 10 > th dose independent rect. 7 2
935 299.74 humidity 50 10 > th dose independent sin 14 NA