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Os01g0120700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.016) R2 : 0.628
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.864 (0.0382) R2dC : 0.418 R2C : 0.366
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.532 (0.0338) R2dN8 : 0.262 R2N8 : 0.21
σ : 0.303
deviance : 41.83
__
_____
C
peak time of C : 0.288
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.22 0.25 13 0.363 0.901 -0.802 0.548 -0.583 0.475 0.555 23.94 310 -- --
28.6 0.249 13 0.3 0.901 -0.704 0.536 -- 0.453 0.469 24.65 321 -- --
29.09 0.251 13 0.279 0.871 -0.823 -- -0.561 0.463 0.292 23.6 1871 -- --
29.24 0.252 13 0.213 0.852 -0.699 -- -- 0.423 0.269 24.96 1899 -- --
67.3 0.382 13 0.209 -- -0.907 -- -0.505 0.393 -- 26.61 2380 -- --
35.69 0.28 13 0.46 0.859 -- 0.482 -- 0.584 0.278 -- -- -- --
36.69 0.284 13 0.442 0.858 -- -- -- 0.582 0.261 -- -- -- --
64.37 0.374 13 0.187 -- -1.03 -- -- 0.399 -- 28.32 899 -- --
29.71 0.254 13 -- 0.834 -0.755 -- -- 0.378 0.279 23.98 3329 -- --
82.95 0.426 13 0.47 -- -- -- -- 0.595 -- -- -- -- --
41.83 0.303 13 -- 0.864 -- -- -- 0.532 0.288 -- -- -- --
65.22 0.376 13 -- -- -1.04 -- -- 0.403 -- 28.4 916 -- --
88.78 0.44 13 -- -- -- -- -- 0.543 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.24 wind 1 14400 < th dose dependent rect. 19 12
16 26.74 wind 1 14400 < th dose dependent sin 11 NA
28 26.87 wind 3 14400 < th dose dependent rect. 22 2
30 26.88 wind 1 14400 < th dose dependent rect. 22 4
35 26.98 wind 1 14400 < th dose independent rect. 22 4
36 26.98 wind 1 14400 > th dose independent rect. 21 10
37 26.98 wind 1 14400 < th dose independent rect. 19 12
57 27.06 humidity 60 43200 < th dose independent rect. 21 13
84 27.18 humidity 60 43200 < th dose independent rect. 24 10
105 27.25 humidity 60 43200 > th dose independent rect. 21 13
109 27.27 wind 1 14400 > th dose independent rect. 22 4
118 27.30 wind 1 43200 < th dose dependent rect. 6 1
131 27.35 temperature 20 4320 < th dose independent rect. 22 1
144 27.39 temperature 25 270 < th dose dependent rect. 19 15
145 27.40 temperature 20 4320 > th dose independent rect. 22 1
165 27.47 atmosphere 1015 43200 < th dose independent rect. 18 3
166 27.47 atmosphere 1015 43200 > th dose independent rect. 15 9
167 27.47 atmosphere 1015 43200 < th dose independent rect. 15 9
169 27.48 atmosphere 1015 43200 > th dose independent rect. 16 7
178 27.50 temperature 20 1440 < th dose independent rect. 5 1
180 27.50 atmosphere 1015 43200 < th dose independent rect. 16 6
186 27.51 humidity 60 43200 < th dose independent rect. 8 2
195 27.52 wind 1 14400 > th dose independent sin 10 NA
214 27.54 wind 1 14400 < th dose independent sin 10 NA
221 27.54 humidity 60 43200 < th dose dependent rect. 20 14
224 27.55 atmosphere 1015 43200 > th dose independent rect. 19 2
277 27.60 temperature 25 720 < th dose dependent rect. 19 6
289 27.62 humidity 60 43200 < th dose dependent rect. 24 10
293 27.63 temperature 20 1440 > th dose independent rect. 5 2
301 27.64 atmosphere 1015 43200 < th dose independent rect. 23 1
310 27.65 atmosphere 1015 43200 > th dose independent rect. 22 2
339 27.67 wind 9 43200 > th dose independent rect. 10 4
342 27.67 wind 1 14400 < th dose dependent rect. 3 6
366 27.70 humidity 50 43200 > th dose independent rect. 13 3
375 27.70 humidity 50 43200 > th dose independent rect. 19 21
380 27.71 atmosphere 1015 43200 < th dose independent sin 16 NA
387 27.71 atmosphere 1015 43200 > th dose dependent rect. 23 1
409 27.73 humidity 60 43200 > th dose independent rect. 8 1
431 27.75 atmosphere 1015 43200 > th dose independent sin 16 NA
437 27.75 humidity 50 43200 > th dose independent rect. 3 13
460 27.76 temperature 25 270 < th dose dependent sin 11 NA
479 27.77 humidity 60 43200 < th dose dependent rect. 7 3
530 27.80 humidity 50 43200 < th dose independent rect. 21 19
539 27.81 humidity 50 43200 < th dose independent rect. 3 13
568 27.82 humidity 50 43200 < th dose independent rect. 13 2
570 27.82 humidity 50 43200 < th dose independent rect. 5 11
611 27.83 atmosphere 1015 43200 > th dose dependent rect. 12 1
619 27.84 humidity 50 43200 < th dose independent rect. 7 8
641 27.84 wind 1 14400 < th dose dependent rect. 11 22
643 27.85 humidity 50 43200 > th dose independent sin 6 NA
644 27.85 humidity 50 43200 < th dose independent sin 6 NA
661 27.85 humidity 50 43200 < th dose dependent rect. 13 1
698 27.87 humidity 90 14400 > th dose dependent rect. 5 1
721 27.88 atmosphere 1015 43200 > th dose dependent rect. 11 20
746 27.90 humidity 50 43200 < th dose independent rect. 11 5
793 27.91 atmosphere 1015 43200 > th dose dependent rect. 6 18
816 27.92 atmosphere 1015 43200 > th dose dependent rect. 8 16
852 27.93 atmosphere 1015 43200 > th dose dependent rect. 15 16
860 27.94 temperature 20 4320 > th dose independent rect. 16 12
882 27.94 atmosphere 1015 43200 > th dose dependent rect. 17 14
927 27.95 atmosphere 1015 43200 > th dose dependent sin 13 NA
962 27.96 temperature 20 4320 < th dose independent rect. 16 12
984 27.96 atmosphere 1015 43200 > th dose dependent rect. 10 5