Os01g0120600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0120600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.45 | 0.32 | 10.3 | 0.362 | 0.823 | 1.35 | -0.177 | 0.318 | -0.0258 | 7.65 | 25.6 | 249 | -- | -- |
| 46.57 | 0.318 | 10.3 | 0.408 | 0.817 | 1.33 | -0.129 | -- | -0.0153 | 7.66 | 25.7 | 245 | -- | -- |
| 46.39 | 0.317 | 10.3 | 0.351 | 0.838 | 1.35 | -- | 0.293 | -0.0219 | 7.79 | 25.69 | 205 | -- | -- |
| 46.57 | 0.318 | 10.3 | 0.385 | 0.822 | 1.34 | -- | -- | -0.0106 | 7.75 | 25.78 | 212 | -- | -- |
| 68.51 | 0.386 | 10.3 | 0.557 | -- | 1.81 | -- | -0.413 | 0.0132 | -- | 32.14 | 493 | -- | -- |
| 72.47 | 0.399 | 10.4 | 0.0685 | 0.98 | -- | -0.129 | -- | -0.298 | 6.88 | -- | -- | -- | -- |
| 72.52 | 0.399 | 10.4 | 0.0662 | 0.979 | -- | -- | -- | -0.298 | 6.88 | -- | -- | -- | -- |
| 68.53 | 0.386 | 10.3 | 0.518 | -- | 1.82 | -- | -- | 0.0464 | -- | 30.76 | 468 | -- | -- |
| 50.41 | 0.331 | 10.3 | -- | 0.867 | 1.17 | -- | -- | -0.0893 | 7.69 | 25.74 | 180 | -- | -- |
| 122.79 | 0.518 | 10.4 | 0.0871 | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
| 72.63 | 0.399 | 10.4 | -- | 0.98 | -- | -- | -- | -0.305 | 6.88 | -- | -- | -- | -- |
| 75.29 | 0.404 | 10.4 | -- | -- | 1.7 | -- | -- | -0.0875 | -- | 36.37 | 461 | -- | -- |
| 122.99 | 0.518 | 10.4 | -- | -- | -- | -- | -- | -0.289 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.62 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 2 | 45.97 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 10 | 46.37 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 13 | 46.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 23 |
| 14 | 46.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 18 | 46.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 19 | 46.84 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 22 | 46.88 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 65 | 47.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 143 | 48.22 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 173 | 48.43 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 206 | 48.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 228 | 49.02 | temperature | 25 | 270 | < th | dose dependent | sin | 8 | NA |
| 255 | 49.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 308 | 49.49 | temperature | 25 | 720 | < th | dose dependent | sin | 13 | NA |
| 362 | 49.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 371 | 49.74 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 394 | 49.83 | temperature | 15 | 720 | > th | dose dependent | sin | 13 | NA |
| 431 | 49.97 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 529 | 50.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 533 | 50.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 569 | 50.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 804 | 51.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 814 | 51.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 877 | 51.55 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 925 | 51.71 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 16 |