Os01g0118700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HGA4.
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Os01g0118700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HGA4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.78 | 0.239 | 3.02 | 0.0703 | 0.0378 | 0.154 | 0.417 | -0.943 | -0.00362 | 13.5 | 50.41 | 15 | -- | -- |
| 26.5 | 0.242 | 3.02 | 0.0686 | 0.0435 | 0.155 | 0.283 | -- | -0.00307 | 14.3 | 50.41 | 15 | -- | -- |
| 26.39 | 0.239 | 3.02 | 0.0687 | 0.0441 | 0.136 | -- | -0.661 | -0.00138 | 14.8 | 50.39 | 14 | -- | -- |
| 26.77 | 0.241 | 3.02 | 0.0713 | 0.0342 | 0.108 | -- | -- | -0.00187 | 14.9 | 42.21 | 20 | -- | -- |
| 26.48 | 0.24 | 3.02 | 0.0766 | -- | 0.167 | -- | -0.653 | -0.00498 | -- | 50.2 | 14 | -- | -- |
| 26.83 | 0.243 | 3.02 | 0.0624 | 0.064 | -- | 0.26 | -- | -0.00406 | 14 | -- | -- | -- | -- |
| 27.09 | 0.244 | 3.02 | 0.0702 | 0.0648 | -- | -- | -- | -0.00248 | 14.3 | -- | -- | -- | -- |
| 26.84 | 0.242 | 3.02 | 0.0749 | -- | 0.157 | -- | -- | -0.00849 | -- | 50.2 | 14 | -- | -- |
| 26.89 | 0.242 | 3.02 | -- | 0.0391 | 0.116 | -- | -- | -0.00918 | 15.8 | 42.21 | 20 | -- | -- |
| 27.34 | 0.244 | 3.02 | 0.0674 | -- | -- | -- | -- | -0.00406 | -- | -- | -- | -- | -- |
| 27.22 | 0.244 | 3.02 | -- | 0.0635 | -- | -- | -- | -0.0103 | 14.3 | -- | -- | -- | -- |
| 26.97 | 0.242 | 3.02 | -- | -- | 0.13 | -- | -- | -0.0106 | -- | 42.2 | 20 | -- | -- |
| 27.46 | 0.245 | 3.02 | -- | -- | -- | -- | -- | -0.0115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.48 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 2 | 24.96 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 4 |
| 4 | 25.00 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 9 | 25.05 | humidity | 70.0 | 30 | < th | dose independent | rect. | 19 | 1 |
| 21 | 25.07 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 2 |
| 35 | 25.13 | humidity | 70.0 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 86 | 25.32 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 87 | 25.33 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 180 | 25.36 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 210 | 25.40 | wind | 3.0 | 90 | > th | dose independent | rect. | 19 | 2 |
| 211 | 25.40 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 19 | 2 |
| 212 | 25.42 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 226 | 25.43 | humidity | 50.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 245 | 25.45 | temperature | 30.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 286 | 25.46 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 19 | 2 |
| 294 | 25.47 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 8 | 11 |
| 296 | 25.47 | atmosphere | 1010.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 303 | 25.48 | wind | 1.0 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 407 | 25.49 | wind | 3.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 531 | 25.50 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 533 | 25.51 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 534 | 25.51 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 4 |
| 549 | 25.52 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 673 | 25.54 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 676 | 25.54 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 682 | 25.55 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 699 | 25.56 | temperature | 25.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 704 | 25.56 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 707 | 25.57 | wind | 9.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 712 | 25.57 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 719 | 25.58 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 720 | 25.58 | wind | 3.0 | 90 | > th | dose dependent | rect. | 10 | 3 |
| 753 | 25.60 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 755 | 25.60 | temperature | 10.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 760 | 25.60 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 761 | 25.60 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 763 | 25.60 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 771 | 25.60 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 775 | 25.60 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 1 |
| 776 | 25.60 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 786 | 25.60 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 1 |
| 790 | 25.60 | wind | 3.0 | 30 | > th | dose independent | rect. | 19 | 19 |
| 792 | 25.60 | temperature | 10.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 795 | 25.60 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 796 | 25.60 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 808 | 25.60 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 815 | 25.61 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 821 | 25.61 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 825 | 25.61 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 831 | 25.61 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 832 | 25.61 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 854 | 25.61 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 857 | 25.61 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 879 | 25.61 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 886 | 25.62 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 887 | 25.62 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 888 | 25.62 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 893 | 25.62 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 2 |
| 900 | 25.63 | atmosphere | 1010.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 910 | 25.63 | wind | 5.0 | 90 | > th | dose independent | rect. | 10 | 3 |
| 971 | 25.63 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 21 | 23 |
| 981 | 25.63 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 985 | 25.63 | wind | 1.0 | 90 | > th | dose dependent | rect. | 19 | 18 |
| 986 | 25.63 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 21 | 23 |