Os01g0117900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nodulin-like protein 5NG4.
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Os01g0117900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nodulin-like protein 5NG4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 336.95 | 0.862 | 8.66 | -5.76 | 1.06 | 1.76 | 1.79 | -8.32 | -0.054 | 5.79 | 26.3 | 4334 | -- | -- |
| 350.57 | 0.872 | 8.47 | -5.05 | 1.05 | 2.02 | 2.01 | -- | 0.0528 | 5.56 | 18.8 | 26405 | -- | -- |
| 344.13 | 0.864 | 8.65 | -5.72 | 1.07 | 1.79 | -- | -8.35 | -0.000879 | 6.12 | 26.4 | 4280 | -- | -- |
| 355.97 | 0.879 | 8.48 | -5.2 | 1.06 | 2.22 | -- | -- | -0.023 | 5.77 | 18.61 | 26392 | -- | -- |
| 403.23 | 0.935 | 8.66 | -5.65 | -- | 1.86 | -- | -8.13 | 0.0312 | -- | 26.45 | 4256 | -- | -- |
| 416.68 | 0.957 | 8.32 | -3.08 | 1.08 | -- | 1.78 | -- | 0.739 | 5.56 | -- | -- | -- | -- |
| 424.21 | 0.965 | 8.32 | -3.07 | 1.09 | -- | -- | -- | 0.732 | 5.78 | -- | -- | -- | -- |
| 416.31 | 0.95 | 8.53 | -5.48 | -- | 2.43 | -- | -- | -0.117 | -- | 18.4 | 27684 | -- | -- |
| 554.52 | 1.1 | 8.12 | -- | 1.07 | -1.58 | -- | -- | 1.63 | 5.61 | 22.1 | 47520 | -- | -- |
| 486.19 | 1.03 | 8.34 | -3.04 | -- | -- | -- | -- | 0.758 | -- | -- | -- | -- | -- |
| 673.33 | 1.21 | 8.25 | -- | 1.05 | -- | -- | -- | 1.07 | 5.92 | -- | -- | -- | -- |
| 616.06 | 1.16 | 8.14 | -- | -- | -1.56 | -- | -- | 1.64 | -- | 22.01 | 47520 | -- | -- |
| 730.06 | 1.26 | 8.26 | -- | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 332.45 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 2 | 332.75 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 3 | 332.83 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 8 | 332.88 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 12 | 333.07 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 7 |
| 13 | 333.15 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 7 |
| 28 | 333.54 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 29 | 333.54 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 51 | 334.23 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 52 | 334.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 58 | 334.41 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 62 | 334.47 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 149 | 335.60 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 154 | 335.61 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 187 | 335.84 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 260 | 336.24 | temperature | 25.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 283 | 336.34 | temperature | 25.0 | 4320 | > th | dose independent | sin | 1 | NA |
| 306 | 336.41 | temperature | 25.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 318 | 336.48 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 354 | 336.62 | temperature | 25.0 | 4320 | < th | dose independent | sin | 1 | NA |
| 383 | 336.72 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 441 | 336.94 | temperature | 25.0 | 270 | < th | dose independent | rect. | 6 | 22 |
| 475 | 337.06 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 599 | 337.50 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 697 | 337.77 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 2 | 17 |
| 699 | 337.78 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 707 | 337.80 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 720 | 337.82 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 781 | 337.97 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 821 | 338.07 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 825 | 338.08 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 1 | 19 |
| 833 | 338.09 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 881 | 338.17 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 901 | 338.21 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 1 | 19 |
| 913 | 338.22 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 8 |