Os01g0117800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0117800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.11 | 0.579 | 5.56 | -0.984 | 2.08 | 1.36 | -0.862 | 3.89 | -0.496 | 21.7 | 9.31 | 4532 | -- | -- |
| 158.13 | 0.586 | 5.69 | -1.64 | 2.11 | 0.918 | -0.986 | -- | -0.645 | 21.7 | 25.6 | 5878 | -- | -- |
| 154.9 | 0.58 | 5.56 | -0.942 | 2.09 | 1.35 | -- | 3.91 | -0.491 | 21.7 | 9.461 | 4499 | -- | -- |
| 161.2 | 0.591 | 5.68 | -1.62 | 2.1 | 0.922 | -- | -- | -0.607 | 21.7 | 25.57 | 5882 | -- | -- |
| 395.4 | 0.926 | 5.52 | -0.91 | -- | 1.75 | -- | 4.44 | -0.557 | -- | 14.95 | 3720 | -- | -- |
| 190.52 | 0.647 | 5.66 | -1.31 | 2.1 | -- | -0.838 | -- | -0.503 | 21.8 | -- | -- | -- | -- |
| 193.19 | 0.651 | 5.66 | -1.28 | 2.11 | -- | -- | -- | -0.502 | 21.8 | -- | -- | -- | -- |
| 369.68 | 0.895 | 5.66 | -1.78 | -- | 1.68 | -- | -- | -0.746 | -- | 24.1 | 2238 | -- | -- |
| 221.75 | 0.694 | 5.61 | -- | 2.08 | 0.624 | -- | -- | -0.288 | 21.7 | 28.14 | 4327 | -- | -- |
| 457.43 | 0.999 | 5.6 | -1.25 | -- | -- | -- | -- | -0.504 | -- | -- | -- | -- | -- |
| 236.07 | 0.719 | 5.62 | -- | 2.1 | -- | -- | -- | -0.36 | 21.7 | -- | -- | -- | -- |
| 396.89 | 0.928 | 5.58 | -- | -- | 1.8 | -- | -- | -0.456 | -- | 24.29 | 806 | -- | -- |
| 498.97 | 1.04 | 5.57 | -- | -- | -- | -- | -- | -0.365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 148.50 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 2 | 148.95 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 3 | 149.07 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 15 | 149.76 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 17 | 150.25 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 19 | 150.40 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 20 | 150.40 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 23 | 150.54 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 26 | 150.78 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 37 | 151.11 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 38 | 151.13 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 39 | 151.15 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 43 | 151.40 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 56 | 151.68 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 61 | 151.70 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 65 | 151.73 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 70 | 151.79 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 71 | 151.80 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 73 | 151.83 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 82 | 151.86 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 89 | 151.89 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 12 | 19 |
| 90 | 151.90 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 91 | 151.90 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 94 | 151.90 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 12 | 16 |
| 96 | 151.91 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 15 | NA |
| 99 | 151.92 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 111 | 151.93 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 116 | 151.94 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 125 | 151.96 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 126 | 151.96 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 134 | 151.97 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 152 | 152.00 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 14 | NA |
| 160 | 152.01 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 20 | 12 |
| 199 | 152.07 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 242 | 152.13 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 17 | 17 |
| 245 | 152.13 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 18 | 20 |
| 299 | 152.17 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 19 | 19 |
| 386 | 152.24 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 606 | 152.40 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 646 | 152.43 | temperature | 10.0 | 4320 | > th | dose dependent | no | NA | NA |
| 654 | 152.43 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 657 | 152.44 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 681 | 152.47 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 706 | 152.48 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 720 | 152.50 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 729 | 152.50 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 733 | 152.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 12 |
| 985 | 152.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 6 |