Os01g0117700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LRK14.
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Os01g0117700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LRK14.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.61 | 0.638 | 8.11 | -0.0272 | 0.519 | -1.27 | -0.122 | -1.79 | -0.738 | 13.5 | 21.4 | 2160 | -- | -- |
| 190.73 | 0.643 | 8.04 | 0.441 | 0.511 | -1.12 | -0.101 | -- | -0.617 | 13.4 | 21.8 | 2252 | -- | -- |
| 184.56 | 0.633 | 8.11 | -0.0355 | 0.498 | -1.26 | -- | -1.71 | -0.724 | 13.5 | 21.5 | 2084 | -- | -- |
| 190.68 | 0.643 | 8.05 | 0.439 | 0.504 | -1.11 | -- | -- | -0.615 | 13.4 | 21.8 | 2250 | -- | -- |
| 199.73 | 0.658 | 8.11 | -0.0356 | -- | -1.32 | -- | -1.75 | -0.722 | -- | 21.6 | 2311 | -- | -- |
| 228.48 | 0.709 | 8.12 | -0.0889 | 0.586 | -- | -0.0113 | -- | -0.971 | 13 | -- | -- | -- | -- |
| 228.48 | 0.708 | 8.12 | -0.0893 | 0.586 | -- | -- | -- | -0.971 | 13 | -- | -- | -- | -- |
| 205.54 | 0.668 | 8.05 | 0.48 | -- | -1.2 | -- | -- | -0.591 | -- | 21.77 | 2430 | -- | -- |
| 194.27 | 0.649 | 8.06 | -- | 0.536 | -0.928 | -- | -- | -0.699 | 13.3 | 22.1 | 2226 | -- | -- |
| 249.79 | 0.739 | 8.13 | -0.111 | -- | -- | -- | -- | -0.982 | -- | -- | -- | -- | -- |
| 228.69 | 0.707 | 8.12 | -- | 0.587 | -- | -- | -- | -0.961 | 13 | -- | -- | -- | -- |
| 209.17 | 0.674 | 8.06 | -- | -- | -1.01 | -- | -- | -0.656 | -- | 22.25 | 2430 | -- | -- |
| 250.12 | 0.738 | 8.13 | -- | -- | -- | -- | -- | -0.97 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 184.08 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 3 | 184.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 7 | 185.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 9 | 185.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 13 | 185.36 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 15 | 185.49 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 18 | 185.62 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 24 | 185.88 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 85 | 187.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 86 | 187.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 94 | 187.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 103 | 187.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 119 | 187.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 143 | 188.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 198 | 188.46 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 211 | 188.56 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 256 | 189.00 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 289 | 189.22 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 310 | 189.38 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 340 | 189.58 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 349 | 189.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 355 | 189.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 366 | 189.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 417 | 190.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 427 | 190.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 468 | 190.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 476 | 190.48 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 480 | 190.50 | wind | 9 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 602 | 191.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 647 | 191.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 742 | 191.67 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 845 | 192.09 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 859 | 192.16 | temperature | 25 | 720 | < th | dose dependent | sin | 2 | NA |
| 902 | 192.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 13 |