Os01g0117600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0117600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.35 | 0.4 | 9.37 | -0.717 | 1.36 | 2.02 | 0.175 | -2.8 | 0.383 | 18.2 | 18.33 | 4823 | -- | -- |
| 77.25 | 0.409 | 9.29 | -0.158 | 1.42 | 2.27 | 0.0491 | -- | 0.477 | 18.3 | 15.2 | 5961 | -- | -- |
| 72.42 | 0.396 | 9.37 | -0.709 | 1.36 | 2.02 | -- | -2.75 | 0.386 | 18.2 | 18.21 | 4835 | -- | -- |
| 77.06 | 0.409 | 9.26 | -0.101 | 1.37 | 2.25 | -- | -- | 0.559 | 18.1 | 14.97 | 5065 | -- | -- |
| 155.88 | 0.581 | 9.36 | -0.73 | -- | 2.21 | -- | -3.55 | 0.26 | -- | 20.4 | 1995 | -- | -- |
| 175.12 | 0.62 | 9.16 | 1.02 | 1.4 | -- | 0.161 | -- | 1.03 | 18.4 | -- | -- | -- | -- |
| 175.18 | 0.62 | 9.16 | 1.02 | 1.4 | -- | -- | -- | 1.03 | 18.4 | -- | -- | -- | -- |
| 119.98 | 0.51 | 9.24 | 0.239 | -- | 2.68 | -- | -- | 0.507 | -- | 17.66 | 465 | -- | -- |
| 77.22 | 0.409 | 9.25 | -- | 1.36 | 2.19 | -- | -- | 0.579 | 18.1 | 15.29 | 4984 | -- | -- |
| 277.48 | 0.778 | 9.13 | 0.986 | -- | -- | -- | -- | 1.01 | -- | -- | -- | -- | -- |
| 202.72 | 0.666 | 9.18 | -- | 1.39 | -- | -- | -- | 0.921 | 18.4 | -- | -- | -- | -- |
| 121.75 | 0.514 | 9.24 | -- | -- | 2.99 | -- | -- | 0.502 | -- | 16.73 | 472 | -- | -- |
| 303.12 | 0.813 | 9.15 | -- | -- | -- | -- | -- | 0.896 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 13 | 61.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 24 | 61.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 25 | 61.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 45 | 64.23 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 46 | 64.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 49 | 65.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 69 | 65.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 78 | 65.53 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 90 | 65.76 | radiation | 1 | 14400 | < th | dose dependent | sin | 13 | NA |
| 92 | 65.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 95 | 65.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 96 | 65.83 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 17 |
| 99 | 65.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 155 | 66.33 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 21 |
| 174 | 66.47 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 22 |
| 178 | 66.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 182 | 66.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 232 | 66.58 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 237 | 66.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 334 | 67.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 371 | 67.56 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 386 | 67.72 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 418 | 68.08 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 446 | 68.31 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 447 | 68.34 | radiation | 20 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 448 | 68.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 458 | 68.61 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 463 | 68.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 468 | 68.76 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 479 | 68.92 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 483 | 68.97 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 484 | 69.01 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 492 | 69.08 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 504 | 69.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 540 | 69.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 16 |
| 543 | 69.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 589 | 69.45 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 18 |
| 602 | 69.48 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 14 |
| 607 | 69.50 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 613 | 69.53 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 753 | 70.18 | radiation | 1 | 14400 | > th | dose independent | sin | 13 | NA |
| 784 | 70.28 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 790 | 70.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 793 | 70.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 856 | 70.50 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 863 | 70.52 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 864 | 70.52 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 888 | 70.60 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 1 | 3 |
| 891 | 70.60 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 923 | 70.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 937 | 70.64 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 13 | NA |
| 953 | 70.66 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 987 | 70.69 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 5 | 1 |