Os01g0117200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ARK protein (Fragment).
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Os01g0117200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ARK protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 515.98 | 1.07 | 9.53 | 4.07 | 1.44 | -5.32 | -0.467 | -2.71 | 1.41 | 24 | 23.09 | 5110 | -- | -- |
| 520.47 | 1.06 | 9.6 | 3.86 | 1.45 | -4.65 | -0.34 | -- | 1.4 | 23.9 | 23.24 | 5280 | -- | -- |
| 514.32 | 1.06 | 9.52 | 4.07 | 1.4 | -5.62 | -- | -3.31 | 1.4 | 23.8 | 22.8 | 5272 | -- | -- |
| 520.95 | 1.06 | 9.61 | 3.85 | 1.45 | -4.63 | -- | -- | 1.38 | 23.9 | 23.29 | 5275 | -- | -- |
| 643.17 | 1.18 | 9.5 | 4 | -- | -5.81 | -- | -3.39 | 1.37 | -- | 22.9 | 5263 | -- | -- |
| 797.7 | 1.32 | 9.36 | 6.19 | 1.58 | -- | -0.449 | -- | 2.47 | 0.0267 | -- | -- | -- | -- |
| 798.57 | 1.32 | 9.36 | 6.21 | 1.58 | -- | -- | -- | 2.47 | 24 | -- | -- | -- | -- |
| 650.69 | 1.19 | 9.59 | 3.74 | -- | -4.88 | -- | -- | 1.31 | -- | 23.5 | 5269 | -- | -- |
| 526.35 | 1.07 | 9.84 | -- | 1.49 | -5.94 | -- | -- | 0.358 | 23.9 | 22.04 | 47520 | -- | -- |
| 956.59 | 1.45 | 9.33 | 6.26 | -- | -- | -- | -- | 2.49 | -- | -- | -- | -- | -- |
| 1815.55 | 1.99 | 9.52 | -- | 1.67 | -- | -- | -- | 1.78 | 0.209 | -- | -- | -- | -- |
| 649.3 | 1.19 | 9.82 | -- | -- | -6.45 | -- | -- | 0.296 | -- | 23 | 36983 | -- | -- |
| 1990.59 | 2.08 | 9.48 | -- | -- | -- | -- | -- | 1.8 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 460.31 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 2 | 462.99 | radiation | 10 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 9 | 464.02 | radiation | 10 | 43200 | < th | dose independent | sin | 13 | NA |
| 16 | 464.58 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 47 | 467.29 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 48 | 467.41 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 54 | 467.99 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 9 |
| 57 | 467.99 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 63 | 468.04 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 88 | 469.25 | radiation | 10 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 152 | 470.52 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 163 | 470.54 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 175 | 470.60 | radiation | 10 | 43200 | < th | dose independent | no | NA | NA |
| 226 | 471.21 | radiation | 40 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 247 | 472.16 | radiation | 40 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 262 | 472.34 | radiation | 40 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 321 | 473.48 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 325 | 473.69 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 327 | 473.86 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 331 | 474.28 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 339 | 474.42 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 343 | 474.48 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 393 | 474.87 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 420 | 475.18 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 422 | 475.18 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 441 | 475.75 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 456 | 475.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 486 | 476.20 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 508 | 476.53 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 15 | NA |
| 516 | 476.63 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 523 | 476.69 | humidity | 80 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 561 | 477.01 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 575 | 477.15 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 595 | 477.36 | radiation | 40 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 678 | 477.97 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 10 |
| 799 | 478.63 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 830 | 478.75 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 880 | 479.04 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 22 | 23 |
| 889 | 479.10 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 952 | 479.73 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 988 | 480.05 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 993 | 480.05 | radiation | 30 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 994 | 480.05 | radiation | 30 | 43200 | < th | dose independent | rect. | 24 | 17 |