Os01g0116900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LRK14.
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Os01g0116900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LRK14.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.22 | 0.463 | 10.3 | 0.0908 | 0.734 | 1.38 | 0.381 | 0.193 | -0.636 | 11.8 | 19.72 | 3788 | -- | -- |
| 97.27 | 0.459 | 10.3 | 0.117 | 0.736 | 1.34 | 0.391 | -- | -0.63 | 11.8 | 19.77 | 3791 | -- | -- |
| 97.83 | 0.461 | 10.3 | 0.103 | 0.735 | 1.38 | -- | 0.242 | -0.633 | 11.9 | 19.73 | 3791 | -- | -- |
| 97.91 | 0.461 | 10.3 | 0.132 | 0.733 | 1.34 | -- | -- | -0.628 | 12 | 19.78 | 3791 | -- | -- |
| 131.42 | 0.534 | 10.3 | 0.138 | -- | 1.48 | -- | 0.232 | -0.619 | -- | 19.9 | 3786 | -- | -- |
| 126.48 | 0.527 | 10.3 | -0.644 | 0.795 | -- | 0.361 | -- | -0.961 | 11.9 | -- | -- | -- | -- |
| 127.02 | 0.528 | 10.3 | -0.629 | 0.793 | -- | -- | -- | -0.959 | 12 | -- | -- | -- | -- |
| 131.57 | 0.534 | 10.3 | 0.185 | -- | 1.45 | -- | -- | -0.6 | -- | 19.8 | 3776 | -- | -- |
| 98.18 | 0.462 | 10.3 | -- | 0.746 | 1.26 | -- | -- | -0.648 | 12 | 19.7 | 3664 | -- | -- |
| 166.65 | 0.603 | 10.4 | -0.654 | -- | -- | -- | -- | -0.97 | -- | -- | -- | -- | -- |
| 137.45 | 0.548 | 10.3 | -- | 0.802 | -- | -- | -- | -0.889 | 12.1 | -- | -- | -- | -- |
| 130.26 | 0.532 | 10.3 | -- | -- | 1.35 | -- | -- | -0.665 | -- | 19.6 | 2442 | -- | -- |
| 177.92 | 0.623 | 10.3 | -- | -- | -- | -- | -- | -0.898 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.12 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 3 | 95.83 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 4 | 95.84 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 9 | 96.80 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 12 | 96.89 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 14 | 96.92 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 16 | 96.94 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 24 | 97.02 | wind | 1.0 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 31 | 97.09 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 40 | 97.14 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 78 | 97.34 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 88 | 97.42 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 106 | 97.51 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 109 | 97.52 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 110 | 97.52 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 116 | 97.55 | temperature | 20.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 120 | 97.58 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 148 | 97.66 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 156 | 97.68 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 157 | 97.70 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 161 | 97.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 163 | 97.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 168 | 97.73 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 175 | 97.75 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 190 | 97.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 208 | 97.82 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 218 | 97.84 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 240 | 97.89 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 246 | 97.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 251 | 97.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 275 | 97.94 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 278 | 97.94 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 281 | 97.94 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 304 | 97.98 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 327 | 98.02 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 359 | 98.05 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 16 | 22 |
| 380 | 98.08 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 439 | 98.15 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 450 | 98.16 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 471 | 98.18 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 519 | 98.22 | atmosphere | 1010.0 | 43200 | > th | dose dependent | sin | 20 | NA |
| 521 | 98.22 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 551 | 98.25 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 567 | 98.26 | wind | 5.0 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 611 | 98.29 | wind | 5.0 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 622 | 98.29 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 631 | 98.30 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 636 | 98.30 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 651 | 98.31 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 682 | 98.33 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 724 | 98.36 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 725 | 98.36 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 740 | 98.37 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 766 | 98.38 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 787 | 98.39 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 788 | 98.39 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 848 | 98.42 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 875 | 98.43 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 884 | 98.43 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 915 | 98.44 | atmosphere | 1010.0 | 43200 | > th | dose dependent | no | NA | NA |
| 916 | 98.44 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 963 | 98.45 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 14 | 23 |