Os01g0116400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0116400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.36 | 0.489 | 12.1 | 1.83 | 1.28 | -1.62 | -1.55 | -0.809 | 0.178 | 23 | 23.18 | 5222 | -- | -- |
| 108.85 | 0.486 | 12.1 | 1.76 | 1.29 | -1.42 | -1.52 | -- | 0.169 | 22.9 | 23.3 | 5280 | -- | -- |
| 118.12 | 0.506 | 12 | 1.86 | 1.29 | -1.89 | -- | -1.28 | 0.191 | 23 | 22.2 | 5252 | -- | -- |
| 118.77 | 0.508 | 12.1 | 1.79 | 1.3 | -1.45 | -- | -- | 0.167 | 22.9 | 23.06 | 5267 | -- | -- |
| 217.39 | 0.687 | 12.1 | 1.71 | -- | -1.51 | -- | 0.0846 | 0.0807 | -- | 26.2 | 3740 | -- | -- |
| 134.3 | 0.543 | 12 | 2.48 | 1.32 | -- | -1.54 | -- | 0.5 | 23 | -- | -- | -- | -- |
| 144.3 | 0.563 | 12 | 2.54 | 1.33 | -- | -- | -- | 0.506 | 23 | -- | -- | -- | -- |
| 199.1 | 0.657 | 12 | 2.07 | -- | -1.87 | -- | -- | 0.221 | -- | 42.93 | 850 | -- | -- |
| 127.26 | 0.525 | 12.2 | -- | 1.29 | -2.27 | -- | -- | -0.286 | 23 | 22.01 | 47038 | -- | -- |
| 254.73 | 0.746 | 12 | 2.57 | -- | -- | -- | -- | 0.516 | -- | -- | -- | -- | -- |
| 314.95 | 0.83 | 12.1 | -- | 1.35 | -- | -- | -- | 0.222 | 23.1 | -- | -- | -- | -- |
| 231.45 | 0.709 | 12.2 | -- | -- | -2.24 | -- | -- | -0.303 | -- | 22.68 | 47084 | -- | -- |
| 429.58 | 0.967 | 12 | -- | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.45 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 2 | 103.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 6 | 103.81 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 7 | 103.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 16 | 104.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 24 | 104.87 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 26 | 104.90 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 32 | 105.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 38 | 105.15 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 52 | 105.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 78 | 105.55 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 7 |
| 81 | 105.57 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 10 |
| 93 | 105.64 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 7 |
| 96 | 105.67 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 141 | 106.06 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 226 | 106.67 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 238 | 106.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 266 | 107.00 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 273 | 107.12 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 14 |
| 277 | 107.15 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 283 | 107.19 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 323 | 107.39 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 338 | 107.49 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 367 | 107.67 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 425 | 107.93 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 459 | 108.10 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 460 | 108.10 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 10 |
| 469 | 108.13 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 470 | 108.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 509 | 108.30 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 538 | 108.41 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 541 | 108.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 559 | 108.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 593 | 108.70 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 628 | 108.88 | wind | 9 | 43200 | > th | dose independent | sin | 20 | NA |
| 630 | 108.88 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 631 | 108.88 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 691 | 109.11 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 707 | 109.20 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 17 |
| 715 | 109.23 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 718 | 109.24 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 725 | 109.26 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 726 | 109.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 734 | 109.28 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 743 | 109.32 | wind | 9 | 43200 | < th | dose independent | sin | 21 | NA |
| 748 | 109.33 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 751 | 109.33 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 8 |
| 752 | 109.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 753 | 109.34 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 766 | 109.38 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 770 | 109.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 782 | 109.42 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 799 | 109.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 802 | 109.48 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 823 | 109.53 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 827 | 109.54 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 840 | 109.56 | wind | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 849 | 109.57 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 865 | 109.60 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 873 | 109.62 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 887 | 109.64 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 892 | 109.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 902 | 109.68 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 919 | 109.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 931 | 109.71 | humidity | 90 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 933 | 109.71 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 21 |
| 938 | 109.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 18 |
| 947 | 109.74 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 16 |
| 951 | 109.75 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 14 |
| 952 | 109.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 979 | 109.79 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 980 | 109.79 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 984 | 109.79 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 9 |
| 1000 | 109.81 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 1 |