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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0116000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0487) R2 : 0.00521
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.158 (0.103) R2dN8 : 0.00673 R2N8 : 0.00521
σ : 0.917
deviance : 386.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
369.75 0.903 3 1.5 0.175 -1.11 -0.119 5.32 0.191 21.1 25.58 2269 -- --
373.83 0.901 3.13 0.307 0.0735 -0.658 -0.045 -- 0.00544 20.1 20.58 1743 -- --
369.78 0.896 3.01 1.46 0.177 -1.09 -- 5.12 0.187 21.3 25.48 2256 -- --
373.83 0.901 3.13 0.304 0.0682 -0.646 -- -- -0.00192 20.2 20.57 1733 -- --
371.42 0.898 3 1.44 -- -1.03 -- 5.1 0.169 -- 25.66 2295 -- --
385.88 0.921 3.16 0.0715 0.00676 -- -0.265 -- -0.149 16 -- -- -- --
386.03 0.92 3.16 0.068 0.029 -- -- -- -0.151 21 -- -- -- --
374.03 0.901 3.13 0.301 -- -0.633 -- -- -0.00414 -- 20.5 1660 -- --
375.95 0.903 3.14 -- 0.0479 -0.551 -- -- -0.0557 20.8 20.86 1661 -- --
386.08 0.918 3.16 0.068 -- -- -- -- -0.151 -- -- -- -- --
386.16 0.919 3.16 -- 0.0289 -- -- -- -0.158 21.2 -- -- -- --
376.07 0.903 3.14 -- -- -0.535 -- -- -0.0564 -- 21.2 1650 -- --
386.2 0.917 3.16 -- -- -- -- -- -0.158 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 356.77 temperature 20 90 < th dose independent rect. 14 5
13 361.56 temperature 20 10 < th dose dependent rect. 15 5
21 361.81 temperature 20 90 < th dose independent rect. 8 11
25 361.99 temperature 20 30 < th dose dependent rect. 9 11
57 363.02 radiation 1 90 < th dose independent rect. 14 1
58 363.02 radiation 1 90 < th dose dependent rect. 14 1
60 363.06 radiation 1 90 < th dose independent rect. 8 1
63 363.06 radiation 1 90 < th dose dependent rect. 8 1
66 363.15 temperature 20 30 < th dose dependent rect. 14 2
68 363.17 temperature 20 90 < th dose independent rect. 14 2
81 363.47 temperature 20 90 < th dose dependent rect. 12 4
82 363.55 temperature 20 10 < th dose dependent rect. 12 5
105 363.86 temperature 20 90 < th dose independent rect. 17 3
106 363.87 temperature 20 30 < th dose dependent rect. 17 3
134 364.34 wind 5 10 > th dose dependent rect. 20 1
145 364.59 wind 7 10 > th dose independent rect. 19 1
158 364.72 wind 7 10 > th dose dependent rect. 19 8
159 364.74 wind 7 10 > th dose independent rect. 19 8
208 365.41 temperature 20 10 < th dose dependent rect. 10 7
214 365.49 temperature 20 90 < th dose independent rect. 14 12
224 365.96 temperature 20 90 < th dose independent sin 19 NA
226 366.10 temperature 30 30 < th dose dependent rect. 15 16
227 366.18 atmosphere 1005 30 > th dose dependent rect. 19 1
234 366.47 temperature 20 90 < th dose independent rect. 12 4
253 367.08 temperature 25 90 < th dose dependent rect. 14 13
255 367.18 temperature 20 90 > th dose independent sin 19 NA
258 367.48 temperature 30 90 < th dose dependent rect. 14 21
265 367.62 radiation 40 1440 < th dose dependent rect. 18 3
268 367.74 temperature 30 30 < th dose dependent rect. 15 19
271 367.80 atmosphere 1005 30 > th dose dependent rect. 15 1
275 367.92 radiation 40 43200 > th dose dependent rect. 10 1
283 368.04 temperature 20 90 < th dose independent rect. 8 18
306 368.31 radiation 20 43200 < th dose independent rect. 5 3
309 368.31 radiation 20 43200 < th dose independent rect. 1 7
310 368.31 radiation 20 43200 < th dose independent rect. 23 9
311 368.31 radiation 20 43200 < th dose independent rect. 21 11
318 368.32 radiation 20 43200 < th dose independent rect. 18 14
334 368.43 temperature 20 90 > th dose dependent rect. 13 22
337 368.46 humidity 80 10 < th dose independent rect. 22 3
352 368.61 radiation 20 43200 > th dose dependent rect. 6 2
371 368.67 radiation 40 43200 > th dose dependent rect. 7 4
402 368.79 temperature 10 90 > th dose dependent sin 14 NA
409 368.87 radiation 40 43200 < th dose independent rect. 14 2
424 368.90 temperature 15 270 > th dose dependent rect. 13 12
431 368.91 radiation 40 43200 < th dose independent rect. 14 4
436 368.91 radiation 40 43200 < th dose independent rect. 14 10
437 368.91 radiation 40 43200 < th dose independent rect. 14 17
438 368.91 temperature 30 90 < th dose dependent sin 15 NA
473 368.99 temperature 30 270 < th dose dependent rect. 12 16
502 369.09 radiation 40 43200 > th dose dependent sin 10 NA
512 369.13 radiation 40 43200 < th dose independent rect. 14 20
537 369.28 radiation 40 43200 < th dose independent sin 11 NA
548 369.31 humidity 90 43200 > th dose dependent rect. 23 1
557 369.34 temperature 10 90 > th dose dependent rect. 13 23
562 369.37 temperature 25 10 < th dose dependent rect. 15 9
600 369.41 temperature 25 270 > th dose independent rect. 13 20
614 369.47 humidity 90 43200 > th dose independent rect. 23 1
636 369.52 radiation 20 43200 > th dose independent rect. 17 15
641 369.54 radiation 20 43200 > th dose independent rect. 6 2
645 369.54 radiation 40 43200 < th dose independent rect. 6 5
688 369.61 temperature 15 10 > th dose dependent rect. 14 13
700 369.63 radiation 40 43200 > th dose dependent rect. 10 23
711 369.65 temperature 20 90 > th dose independent rect. 14 12
716 369.66 radiation 40 43200 < th dose dependent rect. 1 6
717 369.66 temperature 25 270 < th dose dependent rect. 12 11
718 369.67 radiation 40 43200 < th dose dependent rect. 4 3
728 369.67 radiation 40 43200 < th dose dependent rect. 23 8
777 369.71 radiation 40 43200 > th dose dependent rect. 10 6
793 369.72 humidity 60 43200 < th dose independent rect. 18 1
808 369.73 radiation 1 10 < th dose dependent rect. 16 1
827 369.75 radiation 40 43200 > th dose dependent no NA NA
833 369.75 radiation 40 43200 > th dose dependent rect. 8 8
999 369.77 temperature 20 90 < th dose independent rect. 18 8