Os01g0115800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os01g0115800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.63 | 0.485 | 8.17 | 0.3 | 0.886 | 0.861 | 0.408 | -3.51 | 0.666 | 4.51 | 21.1 | 1523 | -- | -- |
| 113.71 | 0.497 | 8.05 | 1.14 | 0.859 | 0.974 | 0.192 | -- | 0.866 | 4.55 | 10.81 | 7641 | -- | -- |
| 106.28 | 0.48 | 8.19 | 0.0387 | 0.936 | 0.931 | -- | -4.68 | 0.6 | 4.71 | 22.74 | 1669 | -- | -- |
| 113.82 | 0.497 | 8.07 | 1.1 | 0.885 | 1.03 | -- | -- | 0.839 | 4.61 | 10.4 | 7693 | -- | -- |
| 148 | 0.567 | 8.22 | -0.0646 | -- | 1.06 | -- | -4.65 | 0.619 | -- | 22.89 | 2787 | -- | -- |
| 130.94 | 0.536 | 8 | 1.63 | 0.888 | -- | 0.404 | -- | 1.12 | 4.42 | -- | -- | -- | -- |
| 131.37 | 0.537 | 8 | 1.62 | 0.892 | -- | -- | -- | 1.12 | 4.49 | -- | -- | -- | -- |
| 152.55 | 0.575 | 8.08 | 1.06 | -- | 1.15 | -- | -- | 0.798 | -- | 10.44 | 8405 | -- | -- |
| 124.06 | 0.519 | 8.13 | -- | 0.888 | 1.44 | -- | -- | 0.534 | 4.61 | -0.6154 | 27682 | -- | -- |
| 173.95 | 0.616 | 8.01 | 1.66 | -- | -- | -- | -- | 1.15 | -- | -- | -- | -- | -- |
| 200.75 | 0.663 | 8.04 | -- | 0.923 | -- | -- | -- | 0.941 | 4.45 | -- | -- | -- | -- |
| 163.56 | 0.596 | 8.16 | -- | -- | 1.51 | -- | -- | 0.489 | -- | -4.695 | 31396 | -- | -- |
| 246.39 | 0.733 | 8.05 | -- | -- | -- | -- | -- | 0.961 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.89 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 2 | 105.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 4 | 105.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 6 | 105.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 9 | 105.50 | radiation | 40 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 11 | 105.52 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 13 | 105.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 14 | 105.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 17 | 105.70 | radiation | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 34 | 105.89 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 11 |
| 42 | 105.96 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 57 | 106.01 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 114 | 106.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 167 | 106.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 190 | 106.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 192 | 106.52 | temperature | 25 | 1440 | > th | dose independent | sin | 20 | NA |
| 196 | 106.53 | radiation | 20 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 197 | 106.54 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 218 | 106.63 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 224 | 106.66 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 20 |
| 228 | 106.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 281 | 106.77 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 309 | 106.81 | radiation | 20 | 43200 | < th | dose independent | sin | 11 | NA |
| 342 | 106.89 | radiation | 10 | 43200 | < th | dose independent | sin | 9 | NA |
| 379 | 106.92 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 383 | 106.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 435 | 106.99 | radiation | 30 | 43200 | < th | dose dependent | sin | 11 | NA |
| 460 | 107.03 | radiation | 1 | 43200 | > th | dose dependent | sin | 11 | NA |
| 470 | 107.07 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 473 | 107.08 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 479 | 107.09 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 529 | 107.15 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 539 | 107.16 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 560 | 107.17 | radiation | 20 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 563 | 107.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 581 | 107.19 | radiation | 40 | 43200 | < th | dose independent | sin | 16 | NA |
| 583 | 107.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 598 | 107.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 604 | 107.20 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 615 | 107.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 624 | 107.21 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 646 | 107.21 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 655 | 107.22 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 701 | 107.25 | humidity | 60 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 707 | 107.25 | radiation | 40 | 43200 | > th | dose dependent | sin | 16 | NA |
| 886 | 107.35 | radiation | 20 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 887 | 107.35 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 936 | 107.37 | radiation | 40 | 43200 | < th | dose independent | no | NA | NA |
| 940 | 107.37 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 10 |