Os01g0115700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0115700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.6 | 0.66 | 9.1 | 3.01 | 1.38 | -2.31 | -0.344 | -3.2 | 1.15 | 4.3 | 0.9268 | 33547 | -- | -- |
| 202.65 | 0.663 | 9.28 | 2.85 | 1.51 | -1.73 | -0.475 | -- | 0.957 | 4.54 | 2.777 | 36581 | -- | -- |
| 197 | 0.654 | 9.09 | 3 | 1.37 | -2.31 | -- | -3.24 | 1.18 | 4.32 | 0.9474 | 35009 | -- | -- |
| 201.36 | 0.661 | 9.29 | 2.65 | 1.41 | -1.99 | -- | -- | 0.875 | 3.95 | 2.838 | 36381 | -- | -- |
| 272.37 | 0.769 | 9.34 | 1.91 | -- | -2.21 | -- | -0.276 | 0.645 | -- | 2.16 | 47520 | -- | -- |
| 269.66 | 0.77 | 9.13 | 3.84 | 1.2 | -- | -0.565 | -- | 1.57 | 4.35 | -- | -- | -- | -- |
| 270.53 | 0.77 | 9.13 | 3.85 | 1.2 | -- | -- | -- | 1.57 | 4.36 | -- | -- | -- | -- |
| 272.43 | 0.769 | 9.36 | 1.86 | -- | -2.19 | -- | -- | 0.617 | -- | 2.287 | 47520 | -- | -- |
| 235.64 | 0.715 | 9.46 | -- | 1.16 | -3.23 | -- | -- | 0.0957 | 4.52 | 1.17 | 47520 | -- | -- |
| 348.06 | 0.872 | 9.14 | 3.89 | -- | -- | -- | -- | 1.6 | -- | -- | -- | -- | -- |
| 660.24 | 1.2 | 9.23 | -- | 1.27 | -- | -- | -- | 1.14 | 4.29 | -- | -- | -- | -- |
| 307.81 | 0.817 | 9.48 | -- | -- | -3.28 | -- | -- | 0.106 | -- | 1.15 | 47520 | -- | -- |
| 747.78 | 1.28 | 9.24 | -- | -- | -- | -- | -- | 1.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.47 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 2 | 195.17 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 4 | 196.38 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 11 |
| 10 | 197.66 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 11 | 197.69 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 17 | 197.96 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 38 | 198.15 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 39 | 198.15 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 40 | 198.15 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 3 | 16 |
| 85 | 198.26 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 1 | NA |
| 121 | 198.32 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 9 |
| 194 | 198.44 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 234 | 198.51 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 253 | 198.54 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 260 | 198.54 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 268 | 198.55 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 270 | 198.55 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 567 | 199.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 620 | 200.15 | wind | 1 | 43200 | < th | dose dependent | sin | 11 | NA |
| 621 | 200.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 636 | 200.31 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 680 | 200.64 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 682 | 200.67 | radiation | 1 | 43200 | < th | dose dependent | sin | 7 | NA |
| 685 | 200.69 | wind | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 704 | 200.84 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 725 | 200.94 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 5 |
| 735 | 201.00 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 736 | 201.00 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 739 | 201.03 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 742 | 201.05 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 746 | 201.07 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 756 | 201.10 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 775 | 201.16 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 805 | 201.33 | temperature | 20 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 814 | 201.37 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 816 | 201.38 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 817 | 201.38 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 819 | 201.38 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 838 | 201.44 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 848 | 201.52 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 852 | 201.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 859 | 201.57 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 863 | 201.58 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 14 |
| 869 | 201.58 | radiation | 20 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 882 | 201.62 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 883 | 201.62 | radiation | 10 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 885 | 201.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 892 | 201.66 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 927 | 201.77 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 18 |
| 942 | 201.82 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 986 | 201.95 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 13 | NA |