Os01g0115100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0115100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.88 | 0.614 | 7.84 | -1.88 | 1.4 | -2.49 | -0.132 | 2.85 | 0.105 | 8.98 | 23.99 | 1488 | -- | -- |
| 181.48 | 0.627 | 7.73 | -0.87 | 1.6 | -2.45 | -0.043 | -- | 0.355 | 8.99 | 23.3 | 2062 | -- | -- |
| 170.94 | 0.609 | 7.84 | -1.88 | 1.4 | -2.49 | -- | 2.85 | 0.104 | 8.98 | 23.99 | 1485 | -- | -- |
| 181.31 | 0.627 | 7.73 | -0.86 | 1.58 | -2.42 | -- | -- | 0.356 | 8.91 | 23.24 | 2060 | -- | -- |
| 283.05 | 0.784 | 7.88 | -1.85 | -- | -2.48 | -- | 2.73 | 0.129 | -- | 23.92 | 1481 | -- | -- |
| 419.58 | 0.96 | 7.5 | 0.144 | 1.4 | -- | -0.0251 | -- | 1.41 | 8.64 | -- | -- | -- | -- |
| 419.58 | 0.959 | 7.5 | 0.143 | 1.4 | -- | -- | -- | 1.41 | 8.64 | -- | -- | -- | -- |
| 295.36 | 0.8 | 7.76 | -0.843 | -- | -2.35 | -- | -- | 0.389 | -- | 23.87 | 1489 | -- | -- |
| 198.61 | 0.656 | 7.69 | -- | 1.55 | -2.21 | -- | -- | 0.552 | 8.94 | 23.1 | 2048 | -- | -- |
| 530.64 | 1.08 | 7.54 | 0.147 | -- | -- | -- | -- | 1.42 | -- | -- | -- | -- | -- |
| 420.12 | 0.959 | 7.51 | -- | 1.4 | -- | -- | -- | 1.39 | 8.63 | -- | -- | -- | -- |
| 312.69 | 0.824 | 7.77 | -- | -- | -2.23 | -- | -- | 0.413 | -- | 23.8 | 1489 | -- | -- |
| 531.21 | 1.08 | 7.54 | -- | -- | -- | -- | -- | 1.41 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 6 | 173.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 13 | 173.93 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 124 | 178.63 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 126 | 178.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 129 | 178.73 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 132 | 178.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 137 | 178.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 18 |
| 147 | 179.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 148 | 179.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 179 | 179.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 245 | 180.95 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 277 | 181.45 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 281 | 181.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 295 | 181.83 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 15 |
| 557 | 184.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 587 | 185.05 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 614 | 185.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 16 |
| 715 | 186.21 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 732 | 186.29 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 935 | 187.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 21 |