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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0114900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LRK14.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.61 (0.0391) R2 : 0.408
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.26 (0.141) R2dE : 0.401 R2E : 0.408
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0313 (0.0881) R2dN8 : 0.000252 R2N8 : 0.00739
σ : 0.719
deviance : 238.15
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.054
memory length : 15886
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
204.74 0.672 5.47 1.73 0.218 2.26 2.12 2.93 0.484 1.74 1.01 4361 -- --
216.89 0.686 5.49 1.22 0.451 2.07 2.42 -- 0.42 1.61 1.07 4421 -- --
220.58 0.692 5.48 1.71 0.0022 2.16 -- 2.95 0.487 1.54 1.02 4300 -- --
230.23 0.707 5.49 1.08 0.177 1.86 -- -- 0.417 1.51 1.07 4350 -- --
220.57 0.692 5.48 1.7 -- 2.15 -- 2.89 0.486 -- 1.016 4300 -- --
291.72 0.801 5.44 1.61 0.133 -- 2.04 -- 0.787 2.09 -- -- -- --
306.69 0.82 5.44 1.55 0.185 -- -- -- 0.774 4.65 -- -- -- --
231.03 0.708 5.49 1.07 -- 1.81 -- -- 0.421 -- 1.05 4325 -- --
255.52 0.744 5.58 -- 0.207 2.23 -- -- 0.183 1.55 1.057 4350 -- --
308.5 0.821 5.44 1.56 -- -- -- -- 0.779 -- -- -- -- --
370.3 0.9 5.48 -- 0.214 -- -- -- 0.601 4.46 -- -- -- --
238.15 0.719 5.61 -- -- 2.26 -- -- 0.0313 -- 1.054 15886 -- --
372.76 0.901 5.48 -- -- -- -- -- 0.605 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.31 wind 9 43200 > th dose independent rect. 16 1
2 193.45 wind 9 43200 < th dose independent rect. 16 1
3 193.73 humidity 70 43200 > th dose dependent rect. 14 1
4 193.87 radiation 1 14400 < th dose dependent rect. 19 10
5 194.01 radiation 1 14400 < th dose dependent rect. 23 6
6 194.15 humidity 80 43200 < th dose independent rect. 14 3
8 194.37 humidity 80 43200 > th dose independent rect. 14 2
13 194.68 humidity 80 43200 < th dose independent rect. 14 1
33 196.01 wind 9 43200 > th dose dependent rect. 16 1
42 196.35 humidity 90 43200 > th dose independent rect. 20 1
55 196.91 radiation 1 43200 < th dose dependent rect. 18 8
64 197.13 radiation 1 43200 < th dose dependent rect. 18 3
69 197.17 atmosphere 1005 43200 > th dose dependent rect. 5 1
71 197.25 atmosphere 1005 43200 > th dose dependent rect. 7 1
75 197.31 atmosphere 1005 43200 > th dose dependent rect. 5 3
79 197.33 radiation 1 14400 > th dose independent rect. 18 1
90 197.34 atmosphere 1005 43200 > th dose independent rect. 13 4
96 197.39 atmosphere 1005 43200 > th dose independent rect. 14 1
184 198.08 atmosphere 1005 43200 > th dose dependent sin 6 NA
239 198.30 atmosphere 1005 43200 < th dose independent rect. 13 4
242 198.33 atmosphere 1005 43200 > th dose independent rect. 16 1
245 198.34 radiation 1 14400 < th dose independent rect. 18 7
267 198.41 atmosphere 1005 43200 < th dose independent rect. 14 1
286 198.47 humidity 90 14400 > th dose dependent rect. 5 2
289 198.49 radiation 1 14400 < th dose independent rect. 18 3
338 198.68 radiation 1 43200 < th dose dependent rect. 3 2
344 198.70 humidity 90 43200 > th dose independent rect. 19 5
361 198.75 atmosphere 1005 43200 > th dose dependent rect. 23 1
368 198.77 radiation 1 14400 > th dose independent rect. 18 22
411 198.91 atmosphere 1005 43200 < th dose independent rect. 16 1
430 198.96 atmosphere 1005 43200 > th dose dependent rect. 2 22
437 198.98 atmosphere 1005 43200 > th dose dependent no NA NA
477 199.03 atmosphere 1005 43200 > th dose dependent rect. 10 23
484 199.04 atmosphere 1005 43200 > th dose dependent rect. 7 23
655 199.50 atmosphere 1010 43200 < th dose independent rect. 5 2
660 199.51 atmosphere 1005 43200 > th dose dependent rect. 13 1
705 199.66 humidity 90 43200 > th dose independent rect. 22 2
752 199.83 humidity 90 43200 > th dose dependent rect. 20 1
766 199.89 radiation 1 43200 < th dose dependent rect. 13 17
796 199.96 radiation 1 43200 < th dose dependent sin 13 NA
809 199.99 atmosphere 1010 43200 > th dose independent rect. 6 1
877 200.27 atmosphere 1010 43200 < th dose independent rect. 22 1
885 200.30 radiation 1 14400 < th dose independent rect. 18 22
910 200.41 humidity 90 43200 < th dose independent rect. 19 1
986 200.71 atmosphere 1005 43200 > th dose independent sin 19 NA
987 200.71 humidity 90 43200 > th dose dependent rect. 19 6
988 200.71 humidity 90 14400 > th dose dependent rect. 23 8
991 200.72 radiation 1 43200 < th dose dependent rect. 13 13
996 200.74 humidity 90 14400 < th dose independent rect. 24 2