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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0114600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor-like kinase ARK1AS (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0364) R2 : 0.568
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.26 (0.086) R2dC : 0.204 R2C : 0.214
β3 : -2.14 (0.112) R2dE : 0.387 R2E : 0.333
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.353 (0.08) R2dN8 : 0.0268 R2N8 : -0.0401
σ : 0.673
deviance : 209.02
__
_____
C
peak time of C : 22.8
E
wheather : temperature
threshold : 21.8
memory length : 47520
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.97 0.649 11.3 1.51 1.24 -1.74 -1.75 -0.7 0.0552 22.8 22.91 5240 -- --
191.21 0.644 11.3 1.46 1.24 -1.53 -1.73 -- 0.0401 22.8 23.3 5297 -- --
203.72 0.665 11.3 1.56 1.25 -1.73 -- -0.569 0.0604 22.8 22.76 5270 -- --
203.9 0.665 11.3 1.55 1.26 -1.52 -- -- 0.0511 22.8 23.16 5268 -- --
289.46 0.792 11.3 1.71 -- -1.57 -- 0.334 -0.0613 -- 26.76 2351 -- --
220.64 0.696 11.2 2.25 1.28 -- -1.74 -- 0.403 22.9 -- -- -- --
233.4 0.715 11.2 2.32 1.29 -- -- -- 0.409 22.9 -- -- -- --
278.29 0.777 11.3 1.84 -- -1.91 -- -- 0.117 -- 39.44 841 -- --
209.02 0.673 11.4 -- 1.26 -2.14 -- -- -0.353 22.8 21.8 47520 -- --
336.35 0.857 11.2 2.35 -- -- -- -- 0.418 -- -- -- -- --
375.41 0.906 11.3 -- 1.31 -- -- -- 0.151 23 -- -- -- --
307.24 0.816 11.4 -- -- -2.18 -- -- -0.373 -- 22.26 47520 -- --
481.85 1.02 11.3 -- -- -- -- -- 0.157 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.12 wind 3.0 43200 < th dose dependent rect. 22 1
5 187.84 wind 9.0 43200 < th dose independent rect. 16 1
9 188.51 radiation 1.0 14400 > th dose independent rect. 6 10
10 188.53 wind 9.0 43200 > th dose independent rect. 16 1
11 188.55 radiation 1.0 14400 < th dose independent rect. 6 10
12 188.60 humidity 90.0 14400 > th dose dependent rect. 5 2
18 188.84 wind 9.0 43200 > th dose dependent rect. 16 1
21 189.09 temperature 10.0 720 > th dose dependent rect. 23 14
23 189.31 humidity 80.0 43200 < th dose independent rect. 16 1
24 189.31 humidity 90.0 14400 > th dose dependent rect. 1 15
34 189.48 humidity 90.0 14400 > th dose dependent rect. 23 17
38 189.55 humidity 90.0 14400 > th dose dependent sin 4 NA
44 189.60 wind 1.0 43200 > th dose dependent rect. 22 1
46 189.61 temperature 15.0 720 > th dose dependent rect. 24 11
63 189.75 wind 3.0 43200 > th dose independent rect. 21 1
72 189.86 wind 3.0 43200 < th dose independent rect. 21 1
84 189.94 humidity 90.0 14400 > th dose dependent rect. 4 9
86 189.95 humidity 80.0 43200 > th dose independent rect. 16 2
104 190.12 radiation 1.0 14400 > th dose independent rect. 18 22
109 190.16 radiation 1.0 14400 > th dose independent rect. 6 23
114 190.24 temperature 10.0 720 > th dose dependent sin 7 NA
117 190.25 radiation 1.0 14400 > th dose independent rect. 6 13
134 190.32 temperature 30.0 720 < th dose dependent sin 6 NA
139 190.36 temperature 30.0 720 < th dose dependent rect. 22 15
147 190.42 wind 3.0 43200 > th dose independent rect. 20 3
149 190.43 temperature 20.0 720 < th dose independent rect. 5 2
161 190.49 radiation 1.0 14400 < th dose dependent rect. 6 12
168 190.54 radiation 1.0 14400 > th dose independent rect. 4 12
177 190.54 radiation 1.0 14400 < th dose independent rect. 20 20
181 190.55 radiation 1.0 14400 < th dose independent rect. 4 12
183 190.55 radiation 1.0 14400 < th dose independent rect. 1 15
184 190.55 radiation 1.0 14400 < th dose independent rect. 23 17
191 190.57 radiation 1.0 14400 > th dose independent sin 0 NA
225 190.68 radiation 1.0 14400 < th dose independent rect. 6 23
251 190.73 wind 9.0 43200 < th dose independent rect. 16 4
255 190.74 radiation 1.0 14400 < th dose independent rect. 6 18
256 190.74 wind 1.0 14400 < th dose dependent rect. 22 6
260 190.75 radiation 1.0 14400 < th dose independent rect. 6 14
277 190.79 radiation 1.0 14400 < th dose dependent rect. 10 8
278 190.80 radiation 1.0 14400 < th dose independent sin 1 NA
298 190.88 radiation 1.0 14400 > th dose independent rect. 9 20
304 190.91 radiation 1.0 14400 < th dose dependent rect. 20 21
307 190.92 radiation 1.0 14400 < th dose dependent rect. 14 4
309 190.92 radiation 1.0 14400 < th dose dependent rect. 22 19
324 190.98 radiation 1.0 14400 > th dose independent rect. 9 10
385 191.09 precipitation 0.1 43200 > th dose dependent rect. 2 6
423 191.16 radiation 1.0 43200 > th dose independent rect. 14 1
424 191.16 radiation 1.0 14400 > th dose independent rect. 9 23
431 191.17 radiation 1.0 43200 < th dose independent rect. 14 1
434 191.17 radiation 1.0 43200 < th dose dependent rect. 14 1
439 191.19 radiation 1.0 14400 > th dose independent rect. 6 2
444 191.21 radiation 1.0 14400 > th dose independent no NA NA
501 191.22 radiation 1.0 14400 < th dose independent rect. 6 2
505 191.24 humidity 90.0 14400 > th dose independent rect. 6 1
506 191.24 precipitation 0.1 43200 < th dose independent rect. 2 6
507 191.24 wind 9.0 43200 > th dose independent rect. 9 10
508 191.24 atmosphere 995.0 43200 > th dose independent rect. 20 16
509 191.24 radiation 1.0 14400 > th dose independent rect. 11 23
510 191.24 precipitation 0.1 43200 < th dose dependent rect. 2 6
523 191.26 wind 9.0 43200 > th dose independent rect. 16 4
542 191.27 radiation 1.0 14400 > th dose independent rect. 14 23
546 191.28 atmosphere 995.0 43200 < th dose independent rect. 21 15
549 191.29 precipitation 0.1 43200 > th dose independent rect. 2 6
586 191.36 humidity 90.0 14400 > th dose dependent rect. 9 22
587 191.37 radiation 1.0 14400 < th dose independent rect. 9 8
608 191.44 temperature 25.0 14400 > th dose independent rect. 16 1
614 191.44 radiation 1.0 14400 < th dose dependent sin 1 NA
654 191.52 wind 1.0 43200 > th dose dependent rect. 19 5
673 191.55 radiation 1.0 14400 < th dose independent rect. 9 23
678 191.57 radiation 1.0 14400 < th dose independent rect. 4 20
685 191.58 radiation 1.0 14400 < th dose independent no NA NA
703 191.58 radiation 1.0 14400 < th dose independent rect. 1 19
756 191.61 wind 7.0 43200 > th dose independent rect. 18 1
757 191.61 temperature 20.0 4320 < th dose independent rect. 6 1
769 191.61 humidity 90.0 14400 > th dose dependent no NA NA
775 191.62 radiation 1.0 14400 < th dose independent rect. 11 23
784 191.63 radiation 1.0 14400 < th dose independent rect. 9 20
799 191.64 radiation 1.0 14400 < th dose independent rect. 14 23
809 191.65 wind 7.0 43200 > th dose dependent rect. 16 3
811 191.65 humidity 90.0 14400 > th dose dependent rect. 14 23
816 191.67 temperature 30.0 720 < th dose dependent rect. 3 7
817 191.68 radiation 1.0 43200 < th dose independent rect. 11 4
821 191.68 temperature 30.0 720 < th dose dependent rect. 4 5
829 191.70 humidity 70.0 43200 > th dose independent rect. 7 1
834 191.71 radiation 1.0 14400 < th dose independent rect. 9 14
841 191.72 radiation 1.0 43200 > th dose independent rect. 11 4
849 191.72 radiation 1.0 43200 < th dose dependent rect. 11 4
889 191.75 atmosphere 995.0 43200 < th dose independent rect. 23 12
894 191.75 temperature 10.0 4320 > th dose dependent rect. 4 1
895 191.75 humidity 80.0 43200 > th dose dependent rect. 18 1
918 191.78 humidity 90.0 14400 > th dose dependent rect. 5 23
919 191.79 humidity 80.0 43200 < th dose independent rect. 10 9
940 191.83 radiation 1.0 14400 > th dose independent rect. 6 4
949 191.84 humidity 70.0 43200 > th dose dependent rect. 16 1
951 191.84 temperature 30.0 4320 < th dose dependent rect. 3 3
953 191.85 temperature 25.0 14400 < th dose independent rect. 16 1
959 191.86 radiation 1.0 14400 < th dose independent rect. 6 4
972 191.89 radiation 1.0 14400 > th dose independent rect. 18 11
977 191.89 radiation 20.0 4320 > th dose dependent rect. 16 16
979 191.90 wind 1.0 43200 > th dose independent rect. 18 1
999 191.93 radiation 1.0 14400 > th dose independent rect. 18 14