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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0114400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0336) R2 : 0.205
β1 : 0.957 (0.123) R2dD : 0.109 R2D : 0.0192
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.642 (0.0719) R2dN8 : 0.186 R2N8 : 0.0965
σ : 0.632
deviance : 182.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.72 0.596 3.33 0.935 0.285 0.309 0.917 0.349 0.643 23.6 82.01 280 -- --
161.11 0.591 3.33 0.974 0.312 0.314 1.05 -- 0.648 23.8 81 322 -- --
162.73 0.594 3.32 0.894 0.234 0.327 -- 0.682 0.651 23.4 84.99 193 -- --
165.25 0.599 3.33 0.913 0.237 0.318 -- -- 0.65 23.6 85 162 -- --
162.57 0.594 3.33 0.91 -- 0.383 -- 0.798 0.646 -- 84 76 -- --
165.22 0.603 3.33 0.976 0.451 -- 1.13 -- 0.638 1.54 -- -- -- --
170.25 0.611 3.33 0.938 0.455 -- -- -- 0.631 1.83 -- -- -- --
166.58 0.601 3.32 0.923 -- 0.399 -- -- 0.664 -- 84.18 76 -- --
186.54 0.636 3.36 -- 0.309 0.372 -- -- 0.548 23.3 85 290 -- --
182.77 0.632 3.32 0.957 -- -- -- -- 0.642 -- -- -- -- --
193.45 0.651 3.35 -- 0.472 -- -- -- 0.527 1.88 -- -- -- --
189.02 0.64 3.34 -- -- 0.419 -- -- 0.563 -- 84.15 79 -- --
206.91 0.671 3.35 -- -- -- -- -- 0.536 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.34 wind 9.0 30 < th dose independent rect. 23 23
2 157.44 atmosphere 1015.0 30 < th dose dependent rect. 22 1
3 157.65 wind 5.0 30 < th dose independent rect. 22 1
4 157.66 wind 7.0 30 < th dose dependent rect. 22 1
6 157.67 wind 1.0 30 > th dose independent rect. 22 1
7 157.67 temperature 20.0 30 > th dose independent rect. 22 1
10 157.68 temperature 10.0 30 > th dose independent rect. 22 1
12 157.68 temperature 30.0 30 < th dose independent rect. 22 1
13 157.68 humidity 50.0 30 > th dose independent rect. 22 1
16 157.68 atmosphere 995.0 30 > th dose independent rect. 22 1
17 157.68 atmosphere 1010.0 30 < th dose independent rect. 22 1
19 157.68 radiation 1.0 30 < th dose independent rect. 22 1
24 157.68 temperature 10.0 30 > th dose independent rect. 23 23
25 157.68 radiation 1.0 30 < th dose dependent rect. 22 1
31 157.71 temperature 10.0 30 > th dose dependent rect. 22 1
33 157.73 humidity 50.0 30 > th dose dependent rect. 22 1
36 157.79 precipitation 0.1 30 < th dose independent rect. 22 1
37 157.79 precipitation 0.1 30 < th dose dependent rect. 22 1
38 157.81 humidity 90.0 30 < th dose independent rect. 22 1
43 157.88 atmosphere 995.0 30 > th dose dependent rect. 22 1
44 157.89 radiation 40.0 4320 < th dose dependent rect. 23 1
47 157.92 atmosphere 1005.0 30 > th dose dependent rect. 22 1
48 157.95 temperature 30.0 30 < th dose dependent rect. 22 1
52 157.99 wind 9.0 1440 < th dose independent rect. 23 1
53 157.99 temperature 10.0 1440 > th dose independent rect. 23 1
56 157.99 temperature 30.0 1440 < th dose independent rect. 23 1
60 157.99 humidity 50.0 1440 > th dose independent rect. 23 1
70 157.99 atmosphere 995.0 1440 > th dose independent rect. 23 1
71 157.99 radiation 1.0 1440 < th dose independent rect. 23 1
91 157.99 temperature 10.0 1440 > th dose independent rect. 24 23
94 157.99 radiation 1.0 1440 < th dose dependent rect. 23 1
100 158.01 humidity 90.0 30 < th dose dependent rect. 22 1
105 158.07 humidity 80.0 90 < th dose independent rect. 20 22
106 158.08 wind 1.0 30 > th dose dependent rect. 22 1
116 158.38 humidity 80.0 90 < th dose independent rect. 24 18
149 158.62 humidity 80.0 90 > th dose independent rect. 23 22
154 158.76 humidity 80.0 90 > th dose dependent rect. 5 23
164 159.11 humidity 50.0 90 > th dose dependent rect. 23 22
170 159.32 humidity 50.0 10 > th dose dependent rect. 6 15
184 159.44 humidity 80.0 90 > th dose dependent rect. 9 10
197 159.57 humidity 80.0 90 > th dose dependent rect. 6 13
198 159.58 atmosphere 1000.0 90 < th dose independent rect. 18 2
200 159.58 atmosphere 1000.0 90 < th dose dependent rect. 18 2
211 159.62 radiation 40.0 43200 < th dose dependent rect. 23 1
216 159.65 humidity 80.0 10 > th dose dependent rect. 8 11
227 159.70 humidity 80.0 10 > th dose dependent rect. 8 13
235 159.73 humidity 90.0 90 < th dose dependent rect. 20 22
250 159.82 precipitation 0.1 90 > th dose independent rect. 15 2
251 159.83 humidity 80.0 90 > th dose independent rect. 5 23
257 159.84 precipitation 0.1 90 > th dose dependent rect. 14 3
261 159.85 humidity 60.0 10 > th dose dependent rect. 23 22
282 159.96 humidity 80.0 90 < th dose independent rect. 7 11
301 160.03 atmosphere 1015.0 30 < th dose independent rect. 21 9
302 160.03 humidity 80.0 90 > th dose independent rect. 6 13
303 160.03 humidity 80.0 90 > th dose dependent sin 22 NA
310 160.06 humidity 90.0 90 > th dose independent rect. 9 10
320 160.11 wind 9.0 30 < th dose dependent rect. 6 15
325 160.12 humidity 90.0 10 < th dose dependent rect. 21 22
330 160.15 radiation 30.0 4320 > th dose independent rect. 7 2
339 160.15 humidity 80.0 10 < th dose independent rect. 9 10
359 160.18 wind 7.0 30 < th dose independent rect. 6 15
373 160.23 temperature 15.0 1440 > th dose independent rect. 7 15
406 160.37 humidity 60.0 10 > th dose dependent rect. 8 13
408 160.38 precipitation 0.1 270 > th dose independent sin 21 NA
411 160.39 humidity 90.0 270 > th dose independent rect. 10 8
415 160.41 precipitation 0.1 270 > th dose independent rect. 10 7
443 160.46 radiation 10.0 30 < th dose dependent rect. 21 11
453 160.48 humidity 80.0 90 > th dose dependent rect. 11 8
455 160.49 precipitation 0.1 270 > th dose independent rect. 9 14
459 160.50 precipitation 0.1 270 > th dose independent rect. 6 17
473 160.52 wind 3.0 90 > th dose independent rect. 21 20
476 160.53 humidity 60.0 43200 < th dose independent rect. 11 1
479 160.53 precipitation 0.1 270 > th dose independent rect. 6 20
486 160.54 precipitation 0.1 270 > th dose independent rect. 9 17
534 160.62 temperature 20.0 30 > th dose independent rect. 6 15
548 160.67 humidity 70.0 90 < th dose independent rect. 18 1
554 160.68 radiation 20.0 30 < th dose dependent rect. 21 9
573 160.73 humidity 90.0 90 < th dose dependent rect. 1 17
575 160.74 humidity 80.0 10 > th dose independent rect. 9 12
612 160.80 humidity 60.0 43200 > th dose independent rect. 10 1
613 160.80 humidity 60.0 43200 > th dose independent rect. 9 3
619 160.80 wind 1.0 30 > th dose dependent rect. 21 22
621 160.80 humidity 50.0 10 > th dose dependent rect. 13 23
644 160.83 temperature 20.0 90 > th dose dependent rect. 19 1
651 160.85 radiation 1.0 90 < th dose independent rect. 16 4
659 160.86 wind 9.0 1440 < th dose independent rect. 22 9
660 160.86 humidity 80.0 270 > th dose independent rect. 22 12
664 160.86 humidity 80.0 10 > th dose dependent sin 22 NA
681 160.88 radiation 1.0 30 < th dose dependent rect. 17 4
693 160.90 humidity 90.0 90 > th dose independent sin 22 NA
694 160.90 wind 1.0 4320 < th dose independent rect. 9 1
696 160.90 humidity 90.0 10 < th dose independent rect. 21 9
698 160.90 precipitation 0.1 270 > th dose independent rect. 6 11
701 160.90 radiation 10.0 10 < th dose independent rect. 6 15
705 160.90 humidity 90.0 10 < th dose dependent rect. 1 18
738 160.93 precipitation 0.1 270 > th dose dependent rect. 10 7
740 160.93 humidity 80.0 270 > th dose dependent rect. 2 23
742 160.94 temperature 10.0 1440 > th dose independent rect. 22 9
745 160.94 temperature 30.0 1440 < th dose independent rect. 22 9
749 160.94 humidity 50.0 1440 > th dose independent rect. 22 9
754 160.94 atmosphere 995.0 1440 > th dose independent rect. 22 9
755 160.94 radiation 40.0 1440 < th dose independent rect. 22 9
779 160.95 humidity 90.0 270 < th dose independent rect. 1 21
789 160.96 humidity 90.0 270 > th dose independent sin 0 NA
790 160.96 humidity 80.0 90 < th dose independent sin 0 NA
813 160.97 humidity 50.0 10 > th dose dependent rect. 16 20
833 160.99 humidity 90.0 10 < th dose independent rect. 12 18
841 161.00 temperature 10.0 30 > th dose independent rect. 21 9
842 161.00 temperature 30.0 30 < th dose independent rect. 21 9
843 161.00 humidity 50.0 30 > th dose independent rect. 21 9
847 161.00 atmosphere 995.0 30 > th dose independent rect. 21 9
848 161.00 radiation 20.0 30 < th dose independent rect. 21 9
853 161.00 temperature 10.0 30 > th dose independent rect. 6 15
855 161.00 atmosphere 1015.0 30 < th dose independent rect. 6 15
877 161.01 humidity 70.0 90 > th dose dependent rect. 13 23
878 161.02 wind 9.0 30 < th dose independent rect. 21 9
882 161.02 wind 7.0 1440 < th dose independent rect. 7 12
885 161.02 wind 7.0 1440 < th dose independent rect. 3 16
886 161.02 wind 7.0 1440 < th dose independent rect. 1 18
887 161.02 humidity 80.0 270 > th dose independent rect. 11 23
907 161.03 humidity 80.0 270 > th dose dependent no NA NA
917 161.04 wind 7.0 1440 > th dose independent rect. 3 16
938 161.05 humidity 90.0 10 < th dose independent rect. 9 21
961 161.06 wind 7.0 1440 > th dose independent rect. 7 12
978 161.07 wind 7.0 1440 > th dose independent sin 2 NA
979 161.07 wind 7.0 1440 < th dose independent sin 2 NA