Os01g0114300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0114300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.25 | 0.349 | 10.9 | 0.0398 | 1.05 | 0.854 | 0.626 | 1.74 | 0.331 | 1.71 | 1.06 | 4326 | -- | -- |
| 56.92 | 0.351 | 11 | -0.252 | 1.1 | 0.889 | 0.369 | -- | 0.256 | 1.83 | 2.029 | 7337 | -- | -- |
| 56.58 | 0.35 | 10.9 | 0.0405 | 1.05 | 0.855 | -- | 1.77 | 0.331 | 1.7 | 1.053 | 4294 | -- | -- |
| 55.66 | 0.347 | 11 | -0.305 | 1.1 | 0.804 | -- | -- | 0.186 | 1.6 | 2.067 | 14529 | -- | -- |
| 96.14 | 0.459 | 10.9 | -0.148 | -- | -0.625 | -- | -0.288 | 0.461 | -- | 1.959 | 4147 | -- | -- |
| 69.94 | 0.392 | 11 | -0.172 | 1.07 | -- | 0.64 | -- | 0.416 | 1.77 | -- | -- | -- | -- |
| 71.55 | 0.396 | 11 | -0.192 | 1.07 | -- | -- | -- | 0.412 | 1.77 | -- | -- | -- | -- |
| 95.44 | 0.457 | 10.9 | -0.15 | -- | -0.638 | -- | -- | 0.464 | -- | 2.096 | 19913 | -- | -- |
| 58.67 | 0.357 | 11 | -- | 1.13 | 0.718 | -- | -- | 0.202 | 1.78 | 2.326 | 14652 | -- | -- |
| 141.02 | 0.555 | 10.9 | -0.148 | -- | -- | -- | -- | 0.436 | -- | -- | -- | -- | -- |
| 72.52 | 0.398 | 10.9 | -- | 1.07 | -- | -- | -- | 0.433 | 1.77 | -- | -- | -- | -- |
| 76.34 | 0.408 | 10.9 | -- | -- | -0.808 | -- | -- | 0.421 | -- | 10.02 | 15608 | -- | -- |
| 141.6 | 0.555 | 10.9 | -- | -- | -- | -- | -- | 0.453 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.59 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 2 | 49.73 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 6 | 49.81 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 8 | 49.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 27 | 49.99 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 40 | 50.05 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 41 | 50.06 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 81 | 50.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 83 | 50.18 | humidity | 90 | 43200 | > th | dose independent | sin | 13 | NA |
| 118 | 50.24 | humidity | 70 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 128 | 50.26 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 158 | 50.31 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 3 |
| 159 | 50.31 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 185 | 50.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 191 | 50.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 207 | 50.37 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 211 | 50.38 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 226 | 50.40 | humidity | 90 | 43200 | < th | dose independent | sin | 14 | NA |
| 271 | 50.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 284 | 50.46 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 300 | 50.48 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 329 | 50.51 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 335 | 50.51 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 341 | 50.52 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 349 | 50.52 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 360 | 50.53 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 376 | 50.54 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 379 | 50.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 466 | 50.61 | humidity | 80 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 534 | 50.64 | humidity | 90 | 43200 | > th | dose dependent | sin | 12 | NA |
| 575 | 50.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 589 | 50.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 601 | 50.68 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 635 | 50.70 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 676 | 50.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 707 | 50.73 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 21 |
| 745 | 50.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 806 | 50.79 | humidity | 80 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 841 | 50.81 | humidity | 80 | 43200 | > th | dose dependent | sin | 20 | NA |
| 849 | 50.82 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 876 | 50.83 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 913 | 50.84 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 1 |