Os01g0113900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0113900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.95 | 0.63 | 9.61 | -0.508 | 0.454 | -5.12 | -0.343 | -4.4 | 0.394 | 10.8 | 1.281 | 1481 | -- | -- |
| 188.41 | 0.639 | 9.67 | -0.932 | 0.52 | -4.6 | -0.0523 | -- | 0.299 | 10.7 | 1.493 | 1485 | -- | -- |
| 180.28 | 0.625 | 9.62 | -0.587 | 0.471 | -5.02 | -- | -3.81 | 0.376 | 10.5 | 1.367 | 1480 | -- | -- |
| 181.18 | 0.627 | 9.71 | -0.866 | 0.274 | -4.69 | -- | -- | 0.203 | 6 | 2.173 | 1522 | -- | -- |
| 185.08 | 0.634 | 9.65 | -0.63 | -- | -5.2 | -- | -3.15 | 0.324 | -- | 1.704 | 1507 | -- | -- |
| 379.76 | 0.914 | 9.54 | -0.0283 | 0.943 | -- | -0.345 | -- | 0.852 | 11.2 | -- | -- | -- | -- |
| 380.24 | 0.913 | 9.54 | -0.043 | 0.946 | -- | -- | -- | 0.85 | 11.1 | -- | -- | -- | -- |
| 184.98 | 0.633 | 9.7 | -0.872 | -- | -4.65 | -- | -- | 0.228 | -- | 2.273 | 1518 | -- | -- |
| 197.74 | 0.655 | 9.66 | -- | 0.309 | -4.24 | -- | -- | 0.361 | 6.33 | 2.453 | 1534 | -- | -- |
| 436.06 | 0.976 | 9.56 | -0.0653 | -- | -- | -- | -- | 0.843 | -- | -- | -- | -- | -- |
| 380.29 | 0.912 | 9.54 | -- | 0.946 | -- | -- | -- | 0.855 | 11.1 | -- | -- | -- | -- |
| 202.38 | 0.663 | 9.67 | -- | -- | -4.27 | -- | -- | 0.361 | -- | 2.45 | 1527 | -- | -- |
| 436.17 | 0.975 | 9.56 | -- | -- | -- | -- | -- | 0.85 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 2 | 179.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 7 | 180.65 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 27 | 183.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 32 | 183.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 33 | 183.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 45 | 184.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 46 | 184.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 51 | 184.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 58 | 185.03 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 59 | 185.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 85 | 185.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 101 | 186.39 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 105 | 187.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 112 | 187.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 119 | 187.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 132 | 187.72 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 133 | 187.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 134 | 187.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 175 | 188.24 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 185 | 188.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 189 | 188.67 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 235 | 188.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 249 | 189.87 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 254 | 190.32 | radiation | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 263 | 190.93 | radiation | 1 | 1440 | > th | dose independent | sin | 0 | NA |
| 324 | 194.24 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 333 | 194.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 347 | 195.55 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 379 | 196.75 | radiation | 1 | 1440 | < th | dose independent | sin | 13 | NA |
| 396 | 197.36 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 448 | 198.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 466 | 199.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 519 | 203.04 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 521 | 203.12 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 523 | 203.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 560 | 203.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 562 | 203.78 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 596 | 204.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 712 | 206.82 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 734 | 207.27 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 764 | 207.47 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 773 | 207.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 776 | 207.72 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 816 | 208.71 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 828 | 208.99 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 856 | 209.48 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 10 |
| 858 | 209.49 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 15 |
| 874 | 209.73 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 876 | 209.76 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 932 | 210.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 943 | 210.20 | temperature | 25 | 14400 | > th | dose dependent | sin | 17 | NA |
| 952 | 210.37 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 962 | 210.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 972 | 210.65 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 3 |