Os01g0113700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0113700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.86 | 0.529 | 6.48 | -1.3 | 0.402 | -1.59 | 0.39 | 0.644 | 0.0227 | 0.217 | 23.02 | 1143 | -- | -- |
| 127.27 | 0.525 | 6.46 | -1.22 | 0.401 | -1.71 | 0.309 | -- | 0.0398 | 0.217 | 22.94 | 1156 | -- | -- |
| 127.45 | 0.526 | 6.47 | -1.29 | 0.416 | -1.61 | -- | 0.508 | 0.0246 | 0.289 | 23 | 1177 | -- | -- |
| 127.67 | 0.526 | 6.47 | -1.23 | 0.407 | -1.7 | -- | -- | 0.036 | 0.323 | 23 | 1177 | -- | -- |
| 135.94 | 0.543 | 6.47 | -1.26 | -- | -1.75 | -- | 0.181 | 0.0175 | -- | 23.16 | 942 | -- | -- |
| 160.71 | 0.594 | 6.41 | -0.75 | 0.518 | -- | 0.204 | -- | 0.311 | 0.419 | -- | -- | -- | -- |
| 160.89 | 0.594 | 6.41 | -0.758 | 0.518 | -- | -- | -- | 0.31 | 0.491 | -- | -- | -- | -- |
| 135.98 | 0.543 | 6.46 | -1.23 | -- | -1.78 | -- | -- | 0.0234 | -- | 23.11 | 941 | -- | -- |
| 160.89 | 0.591 | 6.42 | -- | 0.404 | -1.01 | -- | -- | 0.258 | 0.853 | 23.24 | 793 | -- | -- |
| 177.73 | 0.623 | 6.4 | -0.74 | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
| 176.03 | 0.621 | 6.39 | -- | 0.507 | -- | -- | -- | 0.394 | 0.417 | -- | -- | -- | -- |
| 170.42 | 0.608 | 6.42 | -- | -- | -1.18 | -- | -- | 0.234 | -- | 23.4 | 874 | -- | -- |
| 192.18 | 0.647 | 6.38 | -- | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 2 | 126.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 3 | 126.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 12 |
| 9 | 126.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 16 | 126.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 17 | 126.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 18 | 126.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 27 | 126.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 32 | 126.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 38 | 126.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 42 | 126.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 56 | 126.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 63 | 126.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 64 | 126.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 68 | 126.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 89 | 126.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 101 | 126.92 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 104 | 126.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 161 | 127.08 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 195 | 127.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 199 | 127.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 200 | 127.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 218 | 127.25 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 271 | 127.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 277 | 127.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 358 | 127.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 471 | 128.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 538 | 128.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 547 | 128.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 609 | 128.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 668 | 128.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 704 | 128.87 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 718 | 128.91 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 722 | 128.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 733 | 128.94 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 754 | 129.01 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 759 | 129.03 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 761 | 129.03 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 828 | 129.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 836 | 129.27 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 913 | 129.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |