Os01g0113600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0113600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.63 | 0.467 | 5.51 | 0.109 | 0.732 | 0.896 | -1.09 | -3.28 | -0.374 | 0.496 | 29.99 | 1406 | -- | -- |
| 100.84 | 0.468 | 5.58 | -0.596 | 0.708 | 0.715 | -1.02 | -- | -0.359 | 0.135 | 29.5 | 3312 | -- | -- |
| 103.62 | 0.474 | 5.51 | 0.092 | 0.741 | 0.897 | -- | -3.03 | -0.368 | 0.538 | 29.97 | 1347 | -- | -- |
| 105.46 | 0.478 | 5.58 | -0.539 | 0.724 | 0.628 | -- | -- | -0.364 | 0.504 | 29.54 | 3048 | -- | -- |
| 133.37 | 0.538 | 5.5 | 0.0453 | -- | 0.988 | -- | -2.99 | -0.26 | -- | 29.7 | 1697 | -- | -- |
| 115.38 | 0.504 | 5.58 | -0.783 | 0.671 | -- | -1.15 | -- | -0.348 | 0.454 | -- | -- | -- | -- |
| 121.05 | 0.515 | 5.58 | -0.739 | 0.674 | -- | -- | -- | -0.342 | 0.447 | -- | -- | -- | -- |
| 132.29 | 0.536 | 5.57 | -0.526 | -- | 0.622 | -- | -- | -0.338 | -- | 29.7 | 6042 | -- | -- |
| 112.63 | 0.494 | 5.57 | -- | 0.765 | 0.685 | -- | -- | -0.301 | 0.465 | 29.5 | 2641 | -- | -- |
| 149.59 | 0.572 | 5.57 | -0.716 | -- | -- | -- | -- | -0.331 | -- | -- | -- | -- | -- |
| 135.45 | 0.544 | 5.56 | -- | 0.663 | -- | -- | -- | -0.26 | 0.39 | -- | -- | -- | -- |
| 138.77 | 0.549 | 5.52 | -- | -- | 0.745 | -- | -- | -0.137 | -- | 27.9 | 6008 | -- | -- |
| 163.12 | 0.596 | 5.55 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 2 | 93.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 4 | 94.22 | temperature | 20 | 14400 | < th | dose dependent | sin | 17 | NA |
| 7 | 94.32 | temperature | 20 | 14400 | < th | dose dependent | rect. | 14 | 11 |
| 34 | 94.61 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 111 | 95.11 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 117 | 95.13 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 134 | 95.18 | temperature | 20 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 149 | 95.24 | temperature | 20 | 14400 | < th | dose dependent | sin | 0 | NA |
| 179 | 95.34 | temperature | 20 | 14400 | < th | dose independent | rect. | 1 | 18 |
| 196 | 95.39 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 17 |
| 206 | 95.42 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 253 | 95.51 | temperature | 20 | 14400 | > th | dose independent | sin | 1 | NA |
| 270 | 95.55 | temperature | 20 | 14400 | < th | dose independent | sin | 2 | NA |
| 274 | 95.55 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 21 |
| 438 | 95.84 | temperature | 20 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 439 | 95.84 | temperature | 20 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 440 | 95.84 | temperature | 20 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 443 | 95.85 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 457 | 95.87 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 468 | 95.87 | temperature | 20 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 478 | 95.89 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 494 | 95.90 | temperature | 20 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 505 | 95.91 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 519 | 95.92 | temperature | 20 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 752 | 96.19 | temperature | 20 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 760 | 96.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 892 | 96.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 954 | 96.48 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 959 | 96.49 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 962 | 96.49 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 985 | 96.52 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 993 | 96.53 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 5 |