Os01g0113500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0113500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 217.34 | 0.693 | 7.55 | -2.34 | 0.382 | 2.54 | 0.896 | -5.06 | -0.234 | 3.51 | 25.81 | 4271 | -- | -- |
| 223.31 | 0.696 | 7.46 | -1.31 | 0.355 | 2.01 | 0.969 | -- | -0.258 | 3.25 | 22.95 | 4278 | -- | -- |
| 219.1 | 0.689 | 7.54 | -2.35 | 0.403 | 2.57 | -- | -5.1 | -0.224 | 4.58 | 25.9 | 4237 | -- | -- |
| 225.26 | 0.699 | 7.45 | -1.31 | 0.362 | 2.05 | -- | -- | -0.241 | 4.88 | 23.22 | 4114 | -- | -- |
| 227.25 | 0.702 | 7.54 | -2.32 | -- | 2.63 | -- | -5.02 | -0.214 | -- | 25.84 | 4157 | -- | -- |
| 346.66 | 0.873 | 7.4 | -0.533 | 0.509 | -- | 1.14 | -- | 0.0225 | 3.01 | -- | -- | -- | -- |
| 350.62 | 0.877 | 7.4 | -0.558 | 0.529 | -- | -- | -- | 0.015 | 3.62 | -- | -- | -- | -- |
| 232.22 | 0.71 | 7.46 | -1.33 | -- | 2.08 | -- | -- | -0.238 | -- | 23.18 | 4114 | -- | -- |
| 258.42 | 0.749 | 7.36 | -- | 0.375 | 1.73 | -- | -- | 0.185 | 4.63 | 26.81 | 4079 | -- | -- |
| 366.16 | 0.894 | 7.4 | -0.536 | -- | -- | -- | -- | 0.0291 | -- | -- | -- | -- | -- |
| 358.83 | 0.886 | 7.38 | -- | 0.518 | -- | -- | -- | 0.0771 | 3.63 | -- | -- | -- | -- |
| 266.1 | 0.76 | 7.36 | -- | -- | 1.78 | -- | -- | 0.185 | -- | 26.6 | 4084 | -- | -- |
| 373.73 | 0.902 | 7.38 | -- | -- | -- | -- | -- | 0.0885 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 211.62 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 6 |
| 24 | 213.98 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 39 | 214.65 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 108 | 217.12 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 17 |
| 213 | 217.99 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 222 | 218.04 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 305 | 220.28 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 335 | 221.45 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 340 | 221.60 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 349 | 221.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 373 | 222.31 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 379 | 222.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 5 |
| 381 | 222.42 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 441 | 223.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 600 | 224.94 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 622 | 225.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 739 | 225.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 749 | 225.38 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 758 | 225.42 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 775 | 225.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 781 | 225.53 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 782 | 225.53 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 787 | 225.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 807 | 225.59 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 826 | 225.65 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 837 | 225.70 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 865 | 225.73 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 891 | 225.84 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 938 | 225.93 | temperature | 25 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 944 | 225.95 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 9 |