Os01g0113400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TAK19-1.
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Os01g0113400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TAK19-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.8 | 0.445 | 5.59 | -2.79 | 0.267 | 1.08 | -0.682 | 1.16 | -0.446 | 4.58 | 19.5 | 837 | -- | -- |
| 90.92 | 0.444 | 5.62 | -3.06 | 0.209 | 1.13 | -0.764 | -- | -0.519 | 4.79 | 19.6 | 908 | -- | -- |
| 90.87 | 0.444 | 5.59 | -2.75 | 0.344 | 1.12 | -- | 1.32 | -0.444 | 4.71 | 19.31 | 753 | -- | -- |
| 92.27 | 0.447 | 5.63 | -3.05 | 0.268 | 1.15 | -- | -- | -0.522 | 4.85 | 19.7 | 832 | -- | -- |
| 93.49 | 0.45 | 5.58 | -2.67 | -- | 1.05 | -- | 1.44 | -0.421 | -- | 19.3 | 979 | -- | -- |
| 120.38 | 0.514 | 5.58 | -2.72 | 0.329 | -- | -0.109 | -- | -0.303 | 0.934 | -- | -- | -- | -- |
| 120.42 | 0.514 | 5.58 | -2.72 | 0.329 | -- | -- | -- | -0.302 | 0.76 | -- | -- | -- | -- |
| 93.74 | 0.451 | 5.63 | -3.07 | -- | 1.1 | -- | -- | -0.528 | -- | 19.81 | 1060 | -- | -- |
| 314.13 | 0.825 | 5.53 | -- | 0.35 | 0.271 | -- | -- | -0.0473 | 1.84 | 21.23 | 411 | -- | -- |
| 127.19 | 0.527 | 5.58 | -2.71 | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
| 315.39 | 0.831 | 5.52 | -- | 0.288 | -- | -- | -- | 0.000844 | 0.326 | -- | -- | -- | -- |
| 220.76 | 0.692 | 5.4 | -- | -- | -1.61 | -- | -- | 0.485 | -- | 4.941 | 47520 | -- | -- |
| 320.62 | 0.836 | 5.51 | -- | -- | -- | -- | -- | 0.00433 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.18 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 2 | 79.31 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 10 | 80.26 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 13 | 80.49 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 18 | 81.08 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 20 | 81.29 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 28 | 82.64 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 31 | 82.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 46 | 83.49 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 57 | 83.60 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 105 | 84.63 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 124 | 84.83 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 125 | 84.83 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 127 | 84.86 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 132 | 84.94 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 148 | 85.23 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 159 | 85.42 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 169 | 85.61 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 200 | 85.94 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 216 | 86.09 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 227 | 86.18 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 239 | 86.25 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 305 | 86.60 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 343 | 86.73 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 356 | 86.77 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 384 | 86.89 | wind | 9.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 470 | 87.25 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 474 | 87.27 | wind | 9.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 537 | 87.48 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 538 | 87.48 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 567 | 87.53 | wind | 9.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 577 | 87.54 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 583 | 87.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 641 | 87.74 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 667 | 87.81 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 672 | 87.82 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 694 | 87.87 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 721 | 87.92 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 732 | 87.94 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 12 |
| 827 | 88.09 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 876 | 88.19 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 952 | 88.33 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |