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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0113300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ARK protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.81 (0.0361) R2 : 0.557
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.79 (0.0861) R2dC : 0.423 R2C : 0.459
β3 : 2.17 (0.217) R2dE : 0.0984 R2E : 0.134
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000954 (0.0762) R2dN8 : -1.23e-07 R2N8 : -0.00105
σ : 0.677
deviance : 211.13
__
_____
C
peak time of C : 0.052
E
wheather : radiation
threshold : 0.6848
memory length : 1086
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.68
open length of G : 5.39

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
197.18 0.66 4.12 0.71 1.84 17.4 -0.0615 34.3 0.0257 0.0622 1.65 1273 9 3.1
242.01 0.73 3.84 -0.587 1.89 2.01 -0.368 -- -0.134 0.0254 0.3399 912 9.12 5.32
197.2 0.654 4.12 0.713 1.84 17.4 -- 34.3 0.0261 0.0623 1.65 1273 9 3.1
210.13 0.675 3.8 -0.238 1.81 2.04 -- -- -0.00309 0.0031 0.5152 1086 9.65 5.13
407.54 0.94 4.1 0.804 -- 17.3 -- 34.3 0.049 -- 1.63 1276 9.25 3.12
246.91 0.737 3.84 -0.623 1.87 -- -0.276 -- -0.146 0.00477 -- -- -- --
247.24 0.736 3.84 -0.612 1.87 -- -- -- -0.145 0.00883 -- -- -- --
409.46 0.942 3.78 -0.0814 -- 2.61 -- -- 0.0122 -- 0.4563 1048 9.9 5.42
211.13 0.677 3.81 -- 1.79 2.17 -- -- -0.000954 0.052 0.6848 1086 9.68 5.39
468.27 1.01 3.8 -0.554 -- -- -- -- -0.119 -- -- -- -- --
257.13 0.75 3.83 -- 1.87 -- -- -- -0.0769 24 -- -- -- --
409.55 0.943 3.78 -- -- 2.68 -- -- 0.0267 -- 0.03414 1048 9.93 5.38
476.37 1.02 3.79 -- -- -- -- -- -0.0575 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.59 radiation 1.0 1440 < th dose independent rect. 9 3
2 206.59 radiation 1.0 1440 < th dose dependent rect. 9 3
9 209.53 radiation 1.0 1440 > th dose independent rect. 9 1
10 209.90 radiation 1.0 1440 > th dose independent rect. 11 1
23 211.86 radiation 1.0 1440 > th dose independent rect. 9 3
56 215.56 radiation 1.0 1440 > th dose independent rect. 13 1
79 217.38 humidity 80.0 1440 > th dose independent rect. 12 1
80 217.48 humidity 80.0 1440 > th dose dependent rect. 12 1
85 218.11 wind 3.0 720 > th dose dependent rect. 17 1
92 218.76 wind 5.0 720 > th dose independent rect. 17 1
95 219.06 humidity 80.0 1440 < th dose independent rect. 12 1
102 219.64 atmosphere 1015.0 4320 > th dose dependent rect. 8 1
109 219.86 atmosphere 1015.0 4320 < th dose independent rect. 8 1
115 219.92 atmosphere 1015.0 4320 > th dose independent rect. 8 1
122 220.02 radiation 20.0 1440 < th dose dependent rect. 11 2
160 220.75 radiation 10.0 720 < th dose dependent rect. 14 5
170 220.93 wind 1.0 720 > th dose dependent rect. 14 5
185 221.07 wind 7.0 14400 > th dose dependent rect. 15 3
206 221.45 radiation 10.0 1440 < th dose dependent rect. 9 18
207 221.47 radiation 10.0 1440 < th dose dependent rect. 9 11
208 221.47 radiation 10.0 1440 < th dose dependent rect. 9 16
352 222.77 wind 7.0 4320 > th dose independent rect. 17 1
358 222.82 wind 5.0 720 > th dose independent rect. 14 5
380 222.99 wind 1.0 14400 > th dose independent rect. 1 1
397 223.04 radiation 10.0 1440 < th dose dependent sin 19 NA
412 223.13 precipitation 0.1 720 > th dose dependent rect. 15 13
424 223.22 wind 7.0 4320 < th dose independent rect. 17 1
430 223.32 wind 3.0 4320 > th dose dependent rect. 17 1
450 223.57 radiation 20.0 1440 < th dose independent rect. 12 2
457 223.62 wind 9.0 14400 > th dose independent rect. 14 5
481 223.81 wind 9.0 14400 < th dose independent rect. 14 5
484 223.82 wind 1.0 1440 < th dose independent rect. 6 1
485 223.82 wind 1.0 43200 < th dose dependent rect. 7 1
488 223.84 radiation 10.0 720 < th dose independent rect. 14 5
507 223.91 wind 5.0 720 < th dose independent rect. 13 10
511 223.94 wind 7.0 43200 > th dose independent rect. 16 1
587 224.21 precipitation 0.1 30 > th dose independent rect. 3 17
604 224.30 wind 1.0 1440 < th dose dependent rect. 6 1
612 224.34 wind 7.0 43200 < th dose independent rect. 16 2
617 224.38 radiation 1.0 1440 < th dose independent rect. 9 18
625 224.40 radiation 1.0 1440 < th dose independent rect. 9 15
653 224.45 humidity 60.0 14400 > th dose independent rect. 20 14
654 224.45 radiation 1.0 1440 < th dose independent rect. 11 16
657 224.47 radiation 10.0 720 < th dose independent rect. 16 1
662 224.47 radiation 1.0 1440 < th dose independent rect. 11 13
672 224.52 wind 9.0 4320 < th dose dependent rect. 17 1
688 224.60 atmosphere 1015.0 4320 < th dose independent sin 3 NA
694 224.64 wind 5.0 720 < th dose independent rect. 12 18
695 224.65 atmosphere 1015.0 4320 > th dose independent sin 3 NA
702 224.68 atmosphere 1015.0 4320 > th dose dependent sin 4 NA
703 224.69 humidity 60.0 14400 > th dose independent rect. 5 3
709 224.71 wind 5.0 1440 < th dose independent rect. 13 5
724 224.73 wind 7.0 1440 < th dose independent rect. 14 1
744 224.79 humidity 60.0 14400 > th dose independent rect. 2 8
782 224.89 precipitation 0.1 720 > th dose dependent rect. 2 17
795 224.93 temperature 10.0 43200 > th dose independent rect. 8 8
807 224.97 precipitation 0.1 720 > th dose dependent rect. 9 19
815 225.00 wind 9.0 720 < th dose dependent rect. 13 10
852 225.09 radiation 10.0 43200 < th dose dependent rect. 17 13
867 225.14 wind 3.0 14400 < th dose dependent rect. 1 1
878 225.18 wind 1.0 14400 < th dose independent rect. 1 1
886 225.21 precipitation 0.1 720 > th dose independent rect. 15 13
890 225.22 humidity 60.0 14400 > th dose independent rect. 9 1
893 225.24 wind 1.0 1440 > th dose independent rect. 6 1
900 225.26 humidity 50.0 720 > th dose dependent rect. 15 4
912 225.30 humidity 70.0 720 < th dose dependent rect. 15 1
917 225.32 precipitation 0.1 30 > th dose dependent rect. 3 17
920 225.32 humidity 90.0 720 < th dose dependent rect. 12 19
950 225.40 precipitation 0.1 720 > th dose dependent sin 14 NA
954 225.41 humidity 50.0 720 > th dose dependent rect. 7 21
964 225.45 precipitation 0.1 30 < th dose independent sin 0 NA
967 225.45 precipitation 0.1 30 < th dose dependent sin 0 NA