Os01g0112600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0112600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 324.84 | 0.847 | 3.06 | -0.842 | 0.176 | 29.2 | -0.217 | -243 | -0.0783 | 12.3 | 30.14 | 291 | 7.99 | 0.73 |
| 418.32 | 0.953 | 2.61 | 0.722 | 0.121 | 8.94 | -1.11 | -- | 0.609 | 17.9 | 28.78 | 230 | 8.13 | 0.0668 |
| 324.96 | 0.84 | 3.06 | -0.852 | 0.181 | 29.2 | -- | -243 | -0.0802 | 11.5 | 30.13 | 289 | 7.99 | 0.733 |
| 325.35 | 0.84 | 2.94 | 0.241 | 0.175 | 4.5 | -- | -- | -0.0785 | 11.5 | 30.32 | 261 | 7.88 | 1.05 |
| 326.99 | 0.842 | 3.06 | -0.85 | -- | 29.3 | -- | -243 | -0.0816 | -- | 30.19 | 269 | 8.02 | 0.699 |
| 365.31 | 0.896 | 2.95 | 0.27 | 0.24 | -- | -0.0338 | -- | -0.1 | 11.4 | -- | -- | -- | -- |
| 365.31 | 0.895 | 2.95 | 0.269 | 0.241 | -- | -- | -- | -0.1 | 11.4 | -- | -- | -- | -- |
| 327.25 | 0.843 | 2.95 | 0.236 | -- | 4.58 | -- | -- | -0.0797 | -- | 30.42 | 261 | 7.79 | 1.01 |
| 326.88 | 0.842 | 2.95 | -- | 0.171 | 4.52 | -- | -- | -0.105 | 11.4 | 30.4 | 267 | 7.87 | 1.04 |
| 368.94 | 0.898 | 2.95 | 0.262 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 367.21 | 0.896 | 2.95 | -- | 0.238 | -- | -- | -- | -0.13 | 11.3 | -- | -- | -- | -- |
| 328.71 | 0.844 | 2.95 | -- | -- | 4.6 | -- | -- | -0.106 | -- | 30.48 | 278 | 7.74 | 1.1 |
| 370.76 | 0.899 | 2.96 | -- | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 326.61 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 329.61 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 1 |
| 29 | 338.37 | wind | 1 | 90 | < th | dose independent | rect. | 5 | 9 |
| 33 | 338.60 | wind | 1 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 44 | 339.25 | radiation | 20 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 58 | 340.27 | radiation | 20 | 270 | > th | dose independent | rect. | 6 | 1 |
| 74 | 341.97 | wind | 1 | 90 | < th | dose dependent | rect. | 5 | 9 |
| 75 | 342.06 | wind | 1 | 90 | < th | dose dependent | rect. | 5 | 11 |
| 109 | 343.21 | wind | 5 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 113 | 343.36 | wind | 5 | 90 | > th | dose independent | rect. | 4 | 5 |
| 116 | 343.57 | wind | 5 | 90 | > th | dose dependent | rect. | 2 | 7 |
| 120 | 343.68 | wind | 1 | 10 | < th | dose independent | rect. | 8 | 1 |
| 122 | 343.68 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 124 | 344.08 | wind | 1 | 90 | < th | dose independent | rect. | 6 | 2 |
| 140 | 345.45 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 152 | 345.79 | radiation | 40 | 270 | > th | dose independent | rect. | 8 | 1 |
| 248 | 348.05 | radiation | 10 | 10 | > th | dose independent | rect. | 16 | 16 |
| 259 | 348.33 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 6 | 3 |
| 260 | 348.33 | wind | 1 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 261 | 348.35 | wind | 1 | 90 | < th | dose independent | sin | 0 | NA |
| 287 | 349.38 | wind | 1 | 720 | < th | dose dependent | rect. | 4 | 4 |
| 348 | 350.03 | temperature | 30 | 270 | > th | dose independent | sin | 9 | NA |
| 350 | 350.08 | radiation | 10 | 10 | > th | dose independent | rect. | 16 | 1 |
| 370 | 350.14 | wind | 1 | 90 | > th | dose independent | sin | 0 | NA |
| 373 | 350.21 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 7 | 1 |
| 395 | 350.35 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 6 | 4 |
| 399 | 350.50 | wind | 1 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 400 | 350.52 | radiation | 30 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 410 | 350.69 | humidity | 60 | 10 | < th | dose independent | rect. | 14 | 1 |
| 412 | 350.71 | humidity | 50 | 10 | < th | dose independent | rect. | 16 | 1 |
| 425 | 350.75 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 4 |
| 439 | 350.78 | temperature | 30 | 270 | < th | dose independent | sin | 9 | NA |
| 449 | 350.84 | humidity | 50 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 457 | 350.92 | wind | 1 | 10 | < th | dose independent | rect. | 11 | 7 |
| 467 | 351.00 | radiation | 30 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 468 | 351.03 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 16 | 1 |
| 469 | 351.03 | wind | 1 | 10 | < th | dose independent | rect. | 11 | 5 |
| 495 | 351.12 | temperature | 30 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 499 | 351.17 | temperature | 30 | 10 | > th | dose independent | rect. | 16 | 1 |
| 512 | 351.26 | humidity | 70 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 527 | 351.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 549 | 351.63 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 553 | 351.69 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 8 |
| 568 | 351.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 591 | 351.93 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 592 | 351.93 | wind | 1 | 30 | < th | dose dependent | sin | 23 | NA |
| 602 | 352.10 | radiation | 10 | 10 | > th | dose independent | sin | 11 | NA |
| 604 | 352.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 606 | 352.13 | radiation | 20 | 10 | < th | dose independent | rect. | 7 | 1 |
| 607 | 352.14 | wind | 1 | 10 | < th | dose independent | rect. | 14 | 4 |
| 615 | 352.16 | wind | 1 | 10 | < th | dose dependent | rect. | 14 | 4 |
| 632 | 352.24 | wind | 1 | 10 | < th | dose dependent | rect. | 12 | 3 |
| 639 | 352.29 | wind | 1 | 10 | < th | dose dependent | rect. | 11 | 7 |
| 650 | 352.30 | wind | 1 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 656 | 352.32 | wind | 1 | 10 | < th | dose independent | rect. | 14 | 2 |
| 658 | 352.32 | wind | 1 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 663 | 352.34 | radiation | 10 | 10 | < th | dose independent | sin | 11 | NA |
| 713 | 352.51 | radiation | 30 | 720 | < th | dose independent | rect. | 17 | 16 |
| 720 | 352.57 | wind | 1 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 738 | 352.66 | radiation | 10 | 10 | > th | dose independent | rect. | 7 | 1 |
| 739 | 352.66 | radiation | 20 | 720 | < th | dose independent | rect. | 8 | 1 |
| 757 | 352.67 | wind | 1 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 831 | 352.88 | wind | 1 | 720 | > th | dose independent | rect. | 4 | 18 |
| 865 | 353.09 | wind | 1 | 720 | < th | dose dependent | rect. | 3 | 14 |
| 871 | 353.10 | wind | 1 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 872 | 353.10 | wind | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 873 | 353.10 | wind | 1 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 878 | 353.15 | temperature | 30 | 270 | > th | dose dependent | sin | 9 | NA |
| 879 | 353.15 | wind | 1 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 881 | 353.16 | wind | 1 | 720 | < th | dose dependent | sin | 4 | NA |
| 892 | 353.18 | wind | 1 | 90 | > th | dose independent | rect. | 3 | 13 |