Os01g0112500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0112500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.68 | 0.229 | 12.9 | 0.0162 | 1.11 | -0.0312 | 0.185 | -4.17 | 0.325 | 3.29 | 30.1 | 3857 | -- | -- |
| 24.58 | 0.231 | 12.8 | 0.68 | 1.1 | -0.453 | 0.249 | -- | 0.322 | 3.26 | 31.4 | 2628 | -- | -- |
| 23.71 | 0.227 | 12.9 | -0.0012 | 1.1 | -0.026 | -- | -4.34 | 0.323 | 3.28 | 30.06 | 3617 | -- | -- |
| 24.38 | 0.23 | 12.8 | 0.734 | 1.07 | -0.516 | -- | -- | 0.353 | 3.14 | 31.3 | 2211 | -- | -- |
| 76.94 | 0.411 | 12.8 | 0.602 | -- | -0.703 | -- | -0.8 | 0.418 | -- | 30.06 | 3617 | -- | -- |
| 33.62 | 0.272 | 12.8 | 0.556 | 1.07 | -- | 0.0809 | -- | 0.425 | 3.35 | -- | -- | -- | -- |
| 33.64 | 0.272 | 12.8 | 0.554 | 1.07 | -- | -- | -- | 0.424 | 3.35 | -- | -- | -- | -- |
| 61.77 | 0.368 | 12.8 | 0.759 | -- | -0.685 | -- | -- | 0.48 | -- | 28.12 | 4779 | -- | -- |
| 35.88 | 0.279 | 12.8 | -- | 1.08 | -0.429 | -- | -- | 0.29 | 3.19 | 30.8 | 2155 | -- | -- |
| 97.96 | 0.462 | 12.8 | 0.6 | -- | -- | -- | -- | 0.452 | -- | -- | -- | -- | -- |
| 41.74 | 0.302 | 12.8 | -- | 1.08 | -- | -- | -- | 0.362 | 3.35 | -- | -- | -- | -- |
| 76.69 | 0.409 | 12.8 | -- | -- | -0.626 | -- | -- | 0.395 | -- | 28.12 | 4779 | -- | -- |
| 107.45 | 0.484 | 12.8 | -- | -- | -- | -- | -- | 0.386 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 9 | 23.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 10 | 23.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 25 | 23.74 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 20 |
| 27 | 23.75 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 45 | 23.77 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 61 | 23.80 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 85 | 23.85 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 95 | 23.85 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 133 | 23.94 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 144 | 23.96 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 238 | 24.00 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 11 |
| 255 | 24.01 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 319 | 24.04 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 410 | 24.08 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 415 | 24.08 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 21 |
| 499 | 24.11 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 607 | 24.15 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 617 | 24.15 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 13 |
| 737 | 24.15 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 744 | 24.15 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 763 | 24.16 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 843 | 24.16 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 896 | 24.17 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 938 | 24.18 | temperature | 30 | 14400 | > th | dose dependent | sin | 10 | NA |
| 946 | 24.19 | temperature | 30 | 4320 | > th | dose dependent | sin | 3 | NA |
| 948 | 24.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |