FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0112000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0313) R2 : 0.155
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.27 (0.583) R2dE : 0.152 R2E : 0.148
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.114 (0.0659) R2dN8 : 0.00785 R2N8 : 0.00393
σ : 0.588
deviance : 159.42
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.47
memory length : 55
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.1
open length of G : 2.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
157.77 0.59 2.86 0.0443 0.059 1.44 -0.959 -8.73 0.117 7.94 20.01 31 20 2
157.94 0.585 2.86 0.0541 0.0574 5.46 -0.92 -- 0.11 8.02 17.93 20 20 1.76
160.06 0.589 2.86 0.0111 0.0924 1.44 -- -8.24 0.114 4.78 19.71 37 20.2 1.21
160.12 0.593 2.86 0.0422 0.0934 5.27 -- -- 0.115 4.9 18.67 61 21 2
160.52 0.59 2.86 0.0144 -- 1.43 -- -8.25 0.117 -- 19.75 38 20.3 1.35
187.04 0.641 2.87 -0.0431 0.0444 -- -0.555 -- 0.0895 6.91 -- -- -- --
187.45 0.641 2.87 -0.0561 0.0918 -- -- -- 0.0894 2.94 -- -- -- --
159.3 0.588 2.86 0.078 -- 5.23 -- -- 0.119 -- 18.71 59 21 2.02
158.99 0.587 2.86 -- 0.0925 5.29 -- -- 0.112 5.54 18.46 55 21.1 2.03
187.93 0.641 2.87 -0.0522 -- -- -- -- 0.0917 -- -- -- -- --
187.53 0.641 2.87 -- 0.0907 -- -- -- 0.0956 2.94 -- -- -- --
159.42 0.588 2.86 -- -- 5.27 -- -- 0.114 -- 18.47 55 21.1 2.03
188 0.64 2.87 -- -- -- -- -- 0.0975 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.77 temperature 20.0 30 < th dose dependent rect. 20 2
3 157.78 temperature 20.0 90 < th dose independent rect. 20 1
28 168.50 atmosphere 1005.0 10 < th dose dependent rect. 5 5
30 168.98 atmosphere 1005.0 270 < th dose dependent rect. 5 1
42 170.10 wind 3.0 90 < th dose dependent rect. 20 1
44 170.18 wind 3.0 90 < th dose independent rect. 20 1
53 170.84 radiation 1.0 1440 < th dose independent rect. 11 1
54 170.84 radiation 1.0 1440 < th dose dependent rect. 11 1
67 171.34 atmosphere 1005.0 10 < th dose dependent rect. 5 3
68 171.46 humidity 90.0 90 > th dose independent rect. 21 1
77 171.66 humidity 90.0 10 > th dose independent rect. 21 1
93 171.95 temperature 20.0 270 < th dose dependent rect. 18 1
115 173.11 humidity 80.0 90 > th dose dependent rect. 20 2
119 173.37 temperature 20.0 30 < th dose dependent rect. 16 7
180 174.61 humidity 90.0 270 > th dose independent rect. 18 1
194 175.02 humidity 90.0 720 > th dose dependent rect. 15 7
287 176.39 radiation 1.0 1440 < th dose independent rect. 11 19
290 176.43 radiation 1.0 1440 > th dose independent rect. 11 19
293 176.45 atmosphere 1005.0 10 < th dose dependent rect. 5 1
295 176.46 humidity 90.0 720 > th dose dependent rect. 21 1
310 176.56 humidity 70.0 720 > th dose dependent rect. 20 1
318 176.64 radiation 10.0 43200 < th dose dependent rect. 21 3
323 176.67 radiation 1.0 1440 < th dose independent rect. 11 14
334 176.71 radiation 1.0 1440 < th dose independent rect. 11 8
336 176.71 radiation 1.0 1440 < th dose dependent rect. 11 18
348 176.73 humidity 90.0 720 > th dose dependent rect. 19 4
358 176.76 radiation 1.0 1440 > th dose independent rect. 11 8
368 176.76 radiation 1.0 1440 < th dose dependent rect. 11 14
396 176.80 radiation 1.0 1440 < th dose dependent rect. 11 8
479 177.01 humidity 90.0 720 > th dose dependent sin 19 NA
552 177.21 radiation 1.0 1440 < th dose independent sin 18 NA
553 177.21 precipitation 0.1 270 > th dose independent rect. 2 1
554 177.21 precipitation 0.1 270 > th dose dependent rect. 2 1
560 177.22 humidity 90.0 30 > th dose dependent rect. 5 18
572 177.28 radiation 1.0 1440 > th dose independent sin 18 NA
586 177.30 wind 3.0 90 < th dose independent rect. 4 18
587 177.30 radiation 1.0 1440 < th dose dependent sin 18 NA
593 177.32 temperature 15.0 30 > th dose independent rect. 23 21
602 177.36 atmosphere 1005.0 90 > th dose independent rect. 20 2
623 177.43 humidity 90.0 720 > th dose independent rect. 21 1
693 177.62 humidity 60.0 720 > th dose dependent rect. 19 3
712 177.68 atmosphere 1005.0 10 > th dose independent rect. 21 1
756 177.74 radiation 1.0 1440 < th dose dependent rect. 13 2
831 177.98 humidity 90.0 720 > th dose independent rect. 15 7
832 177.98 wind 5.0 10 < th dose independent rect. 12 11
920 178.19 atmosphere 995.0 30 > th dose dependent rect. 23 21
928 178.22 atmosphere 1010.0 720 < th dose independent rect. 10 8