Os01g0111700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0111700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 294.74 | 0.807 | 9.8 | 1.72 | 0.857 | 3.31 | 1.43 | 4.56 | 0.577 | 3.25 | 1.029 | 11499 | -- | -- |
| 324.04 | 0.838 | 9.82 | 1.06 | 1.3 | 3.16 | 1.32 | -- | 0.639 | 2.2 | 1.531 | 13324 | -- | -- |
| 300.71 | 0.808 | 9.8 | 1.76 | 0.827 | 3.38 | -- | 4.86 | 0.581 | 3.37 | 1.02 | 11460 | -- | -- |
| 318.73 | 0.831 | 9.91 | 0.81 | 1.68 | 3.13 | -- | -- | 0.35 | 2.29 | 1.8 | 13330 | -- | -- |
| 333.1 | 0.85 | 9.76 | 1.82 | -- | 3.39 | -- | 4.99 | 0.587 | -- | 1.24 | 14299 | -- | -- |
| 476.19 | 1.02 | 9.76 | 1.58 | 0.981 | -- | 1.63 | -- | 1.08 | 3.04 | -- | -- | -- | -- |
| 484.93 | 1.03 | 9.77 | 1.54 | 0.985 | -- | -- | -- | 1.07 | 2.93 | -- | -- | -- | -- |
| 340.89 | 0.86 | 9.95 | 0.609 | -- | 3.24 | -- | -- | 0.228 | -- | 1.42 | 15751 | -- | -- |
| 319.58 | 0.833 | 10 | -- | 1.56 | 3.57 | -- | -- | -0.0505 | 2.48 | 1.651 | 13273 | -- | -- |
| 540.8 | 1.09 | 9.76 | 1.58 | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
| 547.59 | 1.09 | 9.81 | -- | 1.02 | -- | -- | -- | 0.9 | 2.94 | -- | -- | -- | -- |
| 338.99 | 0.858 | 10 | -- | -- | 3.12 | -- | -- | 0.0448 | -- | 1.438 | 15762 | -- | -- |
| 606.98 | 1.15 | 9.8 | -- | -- | -- | -- | -- | 0.922 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 268.47 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 4 |
| 5 | 269.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 6 | 269.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 7 | 269.88 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 38 | 274.33 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 48 | 275.35 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 63 | 276.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 75 | 277.17 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 81 | 277.46 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 88 | 277.82 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 92 | 278.17 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 94 | 278.19 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 135 | 279.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 136 | 279.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 139 | 279.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 142 | 279.76 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 147 | 280.15 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 166 | 280.91 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 180 | 281.04 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 194 | 281.06 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 22 |
| 197 | 281.08 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 19 |
| 213 | 281.25 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 7 | 13 |
| 228 | 281.40 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 259 | 282.21 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 266 | 282.43 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 308 | 283.34 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 323 | 283.90 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 342 | 284.18 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 359 | 284.37 | radiation | 1.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 363 | 284.46 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 22 | NA |
| 373 | 284.61 | radiation | 1.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 458 | 286.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 462 | 286.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 498 | 286.71 | humidity | 80.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 499 | 286.71 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 507 | 286.82 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 510 | 286.87 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 511 | 286.93 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 512 | 286.93 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 554 | 287.43 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 6 | 15 |
| 561 | 287.59 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 585 | 287.81 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 586 | 287.81 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 602 | 288.02 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 622 | 288.26 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 635 | 288.32 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 694 | 288.40 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 21 |
| 703 | 288.44 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 705 | 288.44 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 713 | 288.46 | humidity | 80.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 719 | 288.51 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 743 | 288.69 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 811 | 289.26 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 817 | 289.31 | radiation | 1.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 822 | 289.33 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 844 | 289.41 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 850 | 289.43 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 855 | 289.45 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 12 |
| 856 | 289.46 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 857 | 289.46 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 872 | 289.49 | radiation | 1.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 911 | 289.59 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 949 | 289.72 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 952 | 289.73 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 975 | 289.86 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 11 | 19 |