Os01g0110800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os01g0110800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 370.66 | 0.905 | 5.07 | -1.54 | 2 | 2.07 | -0.0626 | -0.801 | -0.685 | 20.8 | 24.87 | 1438 | -- | -- |
| 370.93 | 0.897 | 5.05 | -1.31 | 2 | 2 | -0.0876 | -- | -0.637 | 20.8 | 24.8 | 1438 | -- | -- |
| 370.67 | 0.897 | 5.07 | -1.53 | 2 | 2.08 | -- | -0.781 | -0.688 | 20.8 | 24.81 | 1438 | -- | -- |
| 370.95 | 0.897 | 5.05 | -1.31 | 2 | 2.01 | -- | -- | -0.635 | 20.8 | 24.8 | 1438 | -- | -- |
| 452.17 | 0.99 | 5.05 | -1.25 | -- | 3.28 | -- | 0.316 | -0.786 | -- | 23.7 | 784 | -- | -- |
| 537.59 | 1.09 | 4.99 | -0.598 | 2.04 | -- | 0.0032 | -- | -0.359 | 21.2 | -- | -- | -- | -- |
| 537.59 | 1.09 | 4.99 | -0.598 | 2.04 | -- | -- | -- | -0.359 | 21.2 | -- | -- | -- | -- |
| 450.31 | 0.988 | 5.03 | -1.42 | -- | 3.4 | -- | -- | -0.8 | -- | 23.68 | 780 | -- | -- |
| 412.48 | 0.946 | 5.01 | -- | 2.04 | 1.69 | -- | -- | -0.437 | 20.7 | 25.4 | 1425 | -- | -- |
| 778.45 | 1.3 | 4.93 | -0.591 | -- | -- | -- | -- | -0.37 | -- | -- | -- | -- | -- |
| 547.01 | 1.09 | 4.97 | -- | 2.04 | -- | -- | -- | -0.293 | 21.2 | -- | -- | -- | -- |
| 499.98 | 1.04 | 4.98 | -- | -- | 3.11 | -- | -- | -0.576 | -- | 24 | 769 | -- | -- |
| 787.67 | 1.31 | 4.92 | -- | -- | -- | -- | -- | -0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 365.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 14 |
| 5 | 365.46 | temperature | 25 | 1440 | > th | dose dependent | sin | 6 | NA |
| 9 | 365.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 19 |
| 17 | 366.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 36 | 366.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 39 | 367.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 10 |
| 43 | 367.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 46 | 367.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 64 | 368.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 121 | 369.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 21 |
| 171 | 370.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 182 | 370.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 20 |
| 201 | 370.74 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 364 | 377.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 450 | 381.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 451 | 381.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 467 | 381.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 483 | 382.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 507 | 382.57 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 511 | 382.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 558 | 383.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 598 | 383.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 599 | 383.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 602 | 383.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 604 | 383.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 624 | 383.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 20 |
| 626 | 383.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 627 | 383.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 630 | 383.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 658 | 383.96 | temperature | 30 | 1440 | < th | dose independent | sin | 23 | NA |
| 856 | 384.79 | temperature | 30 | 1440 | > th | dose independent | sin | 23 | NA |
| 934 | 385.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 936 | 385.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 939 | 385.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 940 | 385.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 949 | 385.14 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |